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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA01G0225300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | RAV | ||||||||
Protein Properties | Length: 395aa MW: 41349.5 Da PI: 9.3407 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.6 | 5.3e-12 | 80 | 128 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ r +r++lg+f +++Aa+a++ a+++++g ORGLA01G0225300.1 80 SKFKGVVPQP-NGRWGAQIYE------RhQRVWLGTFAGEDDAARAYDVAAQRFRG 128 79****9888.8*********......44**********99*************98 PP | |||||||
2 | B3 | 98.1 | 5.5e-31 | 216 | 308 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+ tpsdv+k++rlv+pk++ae+h g + +++ l +ed g++W+++++y+++s++yvltkGW++Fvk++gL +gD+v F+++ ORGLA01G0225300.1 216 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsAGGESKGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDVVGFYRS 307 89*******************************5556799*************************************************965 PP S CS B3 86 g 86 ORGLA01G0225300.1 308 A 308 3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-7 | 80 | 128 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-16 | 80 | 136 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.03E-22 | 80 | 136 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.5E-19 | 81 | 136 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-26 | 81 | 142 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.52 | 81 | 136 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 8.5E-38 | 212 | 310 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.29E-29 | 214 | 319 | No hit | No description |
SuperFamily | SSF101936 | 2.88E-30 | 214 | 309 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.662 | 216 | 327 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.1E-21 | 216 | 324 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.3E-28 | 216 | 308 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MDSSSCLVDD TNSGGSSTDK LRALAAAAAE TAPLERMGSG ASAVVDAAEP GAEADSGSGG 60 RVCGGGGGGA GGAGGKLPSS KFKGVVPQPN GRWGAQIYER HQRVWLGTFA GEDDAARAYD 120 VAAQRFRGRD AVTNFRPLAE ADPDAAAELR FLATRSKTEV VDMLRKHTYF DELAQSKRAF 180 AASTPSAATT TASLSNGHLS SPRSPFAPAA ARDHLFDKTV TPSDVGKLNR LVIPKQHAEK 240 HFPLQLPSAG GESKGVLLNF EDAAGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKGLHAGD 300 VVGFYRSAAS AGDDGKLFID CKLVRSTGAA LASPADQPAP SPVKAVRLFG VDLLTAPAPA 360 PVEQMAGCKR ARDLAATTPP QAAAFKKQCI ELALV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-49 | 215 | 322 | 13 | 115 | DNA-binding protein RAV1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 58 | 66 | GGRVCGGGG |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00139 | DAP | Transfer from AT1G13260 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA01G0225300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241984 | 0.0 | AK241984.1 Oryza sativa Japonica Group cDNA, clone: J075097P17, full insert sequence. | |||
GenBank | AP003450 | 0.0 | AP003450.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0034C09. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622542.1 | 0.0 | AP2/ERF and B3 domain-containing protein Os01g0693400 | ||||
Swissprot | Q8RZX9 | 0.0 | Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400 | ||||
TrEMBL | I1NQW3 | 0.0 | I1NQW3_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA01G0225300.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 1e-106 | related to ABI3/VP1 2 |