PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0188200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 346aa    MW: 37481.5 Da    PI: 6.608
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0188200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind92.83.9e-29271272102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        F+ k+y+++ d++++ l++w +++nsfvv+d+  f++ +Lp +Fkh nf+SFvRQLn+Y     +   + +k +++ weF+h+sF +g+++l
  ORGLA01G0188200.1  27 FVAKTYQMVCDPRTDALVRWGRDNNSFVVVDPAAFSQLLLPCFFKHGNFSSFVRQLNTYVSIIQSPAPGFRKVHPDRWEFAHESFLRGQTHL 118
                        9**********************************************************877766666666667999*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l +i r+k+
  ORGLA01G0188200.1 119 LPRIVRRKK 127
                        ******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.4E-3422125IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.81E-3223125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.8E-4623125IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-2627125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-102750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-106577IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-107890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDGLHTELAL GLIGCCGGDG QQQTAPFVAK TYQMVCDPRT DALVRWGRDN NSFVVVDPAA  60
FSQLLLPCFF KHGNFSSFVR QLNTYVSIIQ SPAPGFRKVH PDRWEFAHES FLRGQTHLLP  120
RIVRRKKRGE GGGGGGGASC SFGGGAGEHQ VAAAAASVGM SGEEEDAAED VLAKEAALFE  180
EVQRLRHEQT AIGEELARMS QRLQATERRP DQLMSFLAKL ADDPNAVTGH LLEQAAERKR  240
RRQHLPSHEP TVCPLPPAPP PQPPQPLLAL AGAAAMDGTY WWTTEHHHHH QMKPMTVLPS  300
LEPPTASCGV HQVPELGGGG VMGLTTDGEA KVEPPFPFCL LGQAFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-201712519129Heat shock factor protein 1
5d5v_B4e-201712519129Heat shock factor protein 1
5d5v_D4e-201712519129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237241RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0188200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3444950.0AY344495.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636084.10.0heat stress transcription factor C-1a
SwissprotQ6VBA40.0HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBLI1NPU20.0I1NPU2_ORYGL; Uncharacterized protein
STRINGORGLA01G0188200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.18e-54heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]