PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0188000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 350aa    MW: 36915.6 Da    PI: 6.4072
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0188000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY856.9e-27179237259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +D ++WrKYGqK++kgs++pr+YY+C+s  gC+++k vers   p ++++tY  eH h+
  ORGLA01G0188000.1 179 SDLWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKMVERSPAKPGMLVVTYMAEHCHP 237
                        799***********************9988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081130.377173239IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-27174239IPR003657WRKY domain
SuperFamilySSF1182901.24E-24176239IPR003657WRKY domain
SMARTSM007741.6E-32178238IPR003657WRKY domain
PfamPF031061.1E-22180237IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MRGPLLLRAV VVVAMEHFND WDLQAVVRSC SFPQSEPPRV GVGVPAAPGA GGAPVVVAPP  60
ARAPDGPDQM ARASASALYD LEYLDLDHKP FLLPGSSSSS SSSRAVARAR GEDDGKGRHE  120
VMISFPAAAA ASTSGAQPRS PSGRKPGIRT PRPKRRSSKK SQLKKVVYEV PVADGGVSSD  180
LWAWRKYGQK PIKGSPYPRG YYKCSSMKGC MARKMVERSP AKPGMLVVTY MAEHCHPVPT  240
QLNALAGTTR HKSAPTGDDD KPTSPGPAAG RAAAGEGVVK CEDVDGNELS AMAADGGAED  300
TAAAADDDGE LWPEGMGLEL DEFLGPMDDD VFEFDHVLED DGVLGRRLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-21160240280Disease resistance protein RRS1
5w3x_D6e-21160240280Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160RRSSKKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0188000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114160.0AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence.
GenBankAY8706010.0AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640600.10.0WRKY transcription factor 22
TrEMBLI1NPU00.0I1NPU0_ORYGL; Uncharacterized protein
STRINGORGLA01G0188000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-37WRKY family protein