PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0163600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 465aa    MW: 46969.5 Da    PI: 5.0386
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0163600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.21.3e-07361401954
                        HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         r+RR+ri +++  L++l+P  a      K++ a++L +A +Y++ L
  ORGLA01G0163600.1 361 ARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 401
                        69******************966......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.869352401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12358407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.73E-11358406No hitNo description
SuperFamilySSF474593.27E-13358412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-11360410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-5361401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MDRGFNEMIL SESVWNGGGG GDGDGGAVVL PPEVGGVNAV DGSGMTVLER LVLDEALAAA  60
ILELQGIQAP GCGGGGGGKV EVVPPTAAGD GGVEAAVAFA AMATGTPAYA DVDADVLQRQ  120
RQHHHRHQGA MGMAAEYDVA PATPAVTLSA VAPPPPPPAF ATAAASVDGG GAIDATVFSG  180
IGTDDVVDAV SATVAMTTAT ATTSQCERVR GGGGGGGCGR KQRRPGRKRK AAEPTAAAAA  240
ADMSSQDNSL CSLLASNTAG ADGGIQIAFS TSAPASKRAK PSLSSSSSSI SFDGRGPGGS  300
GGGGCGDDPL YEPDTEALAQ VKEMIYRAAA MRPVTLGAED AGERPRRRNV RISSDPQTVA  360
ARQRRERISE RLRVLQKLVP GGAKMDTASM LDEAANYLRF LKSQIRELQT LDRRNYPNAA  420
MSMNTAAATM ATSSSPTYNN SNAAMPAFAL PETLGCGGGG VEQLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1361366RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0163600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0031410.0AP003141.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0002B05.
GenBankAP0032960.0AP003296.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0697C12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629736.10.0transcription factor LATE FLOWERING-like
RefseqXP_015629741.10.0transcription factor LATE FLOWERING-like
TrEMBLI1NP460.0I1NP46_ORYGL; Uncharacterized protein
STRINGORGLA01G0163600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.19e-35bHLH family protein