PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0103700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 386aa    MW: 41219.5 Da    PI: 6.6533
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0103700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.22.6e-07184226754
                        HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        + E++RR r+ ++++ L  l+P++     +K + a++   A+eYI++L
  ORGLA01G0103700.1 184 KKEKQRRLRLTEKYNALMLLIPNR-----TKEDRATVISDAIEYIQEL 226
                        57*********************9.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.264177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-4183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-5184226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-8186250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-9186248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-5186226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MYHPQCELLM PLESLEMDVG QSHLAAAVAA AMPGELNFHL LHSLDAAAAA ASSTAASASS  60
QPTVDYFFGG ADQQPPLPPA VQYDQLAAPH HHQTVAMLRD YYGGHYPPPA AAAAATEAYF  120
RGGPRTAGSS SLVFGPADDE SAFMVGPFES SPTPRSGGGG GGGRKRSRTT AGFHGGGPAN  180
GVEKKEKQRR LRLTEKYNAL MLLIPNRTKE DRATVISDAI EYIQELGRTV EELTLLVEKK  240
RRRREMQGDV VDAAPSSVVA GMDQAAESSE GEVMAAAAAA AMGAVAPPPR QAPIRSTYIQ  300
RRSKETFVDV RIVEDDVNIK LTKRRRDGCL AAASRALDDL RLDLVHLSGG KIGDCHIYMF  360
NTKIHPGSPV FASAVASRLI EVVDEY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238243KKRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0103700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1068500.0AK106850.1 Oryza sativa Japonica Group cDNA clone:002-118-A11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645943.10.0transcription factor TIP2
SwissprotQ5JNS00.0TIP2_ORYSJ; Transcription factor TIP2
TrEMBLA0A0D3EMT10.0A0A0D3EMT1_9ORYZ; Uncharacterized protein
TrEMBLI1NME70.0I1NME7_ORYGL; Uncharacterized protein
STRINGORGLA01G0103700.10.0(Oryza glaberrima)
STRINGOBART01G12290.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.11e-32bHLH family protein