PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0102100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 591aa    MW: 60842.2 Da    PI: 7.6081
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0102100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30304362259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++v+++tYeg+Hnh+
  ORGLA01G0102100.1 304 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAiGCPVRKQVQRCAEDKTVLITTYEGNHNHQ 362
                        7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182903.14E-26301364IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-30302364IPR003657WRKY domain
SMARTSM007746.8E-36303363IPR003657WRKY domain
PROSITE profilePS5081128.047303364IPR003657WRKY domain
PfamPF031065.2E-26305362IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MELRPPPPKH HHHRRRRGGG GEDGGEEEEE EAGRLSLRGG GFWRRHDGEE EEEKGGGRRG  60
EIKEVDFFLG ANGRDVVVAS RRHDDGFRGT THGGCGGGDV NIGLDLLTTT TAGAAAGGAA  120
AGAGEEDTGK NHRKEATTAA VDVELRRVVE ENRRLRGMLD ELTRSYSALY HQYLQVTQQQ  180
NHRHPDHHLI MNNNNNRPSL AQTHRTAATT TATTQQFLEP RASSTAQAAA DADMAASDDE  240
AGRDGDASSP SLSNAAAGGG GGNKMRRVGG QDETAAAAPA RENGEQQAAA AAELPCRKPR  300
VSISDGCQWR KYGQKMAKGN PCPRAYYRCT MAIGCPVRKQ VQRCAEDKTV LITTYEGNHN  360
HQLPPAATTM ANTTSAAAAM LLSGPAASRD GAAAALLGHH HHHHPAAMFH QSFPYASTMA  420
TLSASAPFPT ITLDLTQTPA GGAGAASLLH ALHRPPVIHP GAAAQAMPFA VPPQLAMYLP  480
QQRAAAAGLG GAGAARQPSV METVTAALAA DPNFTTALAA AISSVVAGGA HHQALSTTPR  540
GSAAGAGDGN GNGSSAAAVA TGAASPAATA GAPAASGSPP RLATQSCTTS N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-213033661476WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0102100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0024800.0AP002480.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0469E05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880603.10.0probable WRKY transcription factor 47 isoform X1
TrEMBLI1NMD10.0I1NMD1_ORYGL; Uncharacterized protein
STRINGORGLA01G0102100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.16e-47WRKY family protein