PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0099200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 353aa    MW: 37669.8 Da    PI: 5.3118
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0099200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-161461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rgrWT+eEde+l++++++ G g W++ ++  g+ R++k+c++rw +yl
  ORGLA01G0099200.1 14 RGRWTKEEDEKLARYIRENGEGAWRSMPKNAGLLRCGKSCRLRWINYL 61
                       8*******************************99************97 PP
2Myb_DNA-binding40.75.3e-1367148148
                        TSSS-HHHHHHHHHHHHHTTTT...................................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...................................tWktIartmgkgRtlkqcksrwqkyl 48 
                        rg+ +++E+++++++++ lG++                                    W++Ia +++ gRt++++k++w+++l
  ORGLA01G0099200.1  67 RGNISPQEEDIILNLHATLGNRrmemhtemlsatgfnlaqrkfpmlltddtdgglscLWSLIAGHLP-GRTDNEIKNYWNSHL 148
                        7899***************************************************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-21564IPR009057Homeodomain-like
PROSITE profilePS5129421.098965IPR017930Myb domain
SMARTSM007177.4E-121363IPR001005SANT/Myb domain
PfamPF002498.0E-151461IPR001005SANT/Myb domain
SuperFamilySSF466897.63E-201589IPR009057Homeodomain-like
CDDcd001671.56E-101661No hitNo description
PROSITE profilePS500907.86362148IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.5E-206587IPR009057Homeodomain-like
SMARTSM007171.7E-966150IPR001005SANT/Myb domain
PfamPF002494.3E-1067148IPR001005SANT/Myb domain
CDDcd001673.18E-671148No hitNo description
Gene3DG3DSA:1.10.10.609.5E-20124151IPR009057Homeodomain-like
SuperFamilySSF466891.79E-6125151IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGRAPCCEKV GLRRGRWTKE EDEKLARYIR ENGEGAWRSM PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI SPQEEDIILN LHATLGNRRM EMHTEMLSAT GFNLAQRKFP MLLTDDTDGG  120
LSCLWSLIAG HLPGRTDNEI KNYWNSHLSR KGYEFLRGGG GGAVVDVDLS KLPGGGKRRG  180
GRTGRSSSGK EKTRTKEKDK APAPEAAHND DGGGGGGGGI DNVSAASHSH REEQAQASAS  240
GLTSDGLEEG PLGLSEEMVS GPVGPVSPKP EVGQDGSSAE SGCCGPSGPS GPTEAVGQDM  300
GDKSMDWDLV GLDDGFANDD MWGSLSWDYG ELVGPDGVHQ GEVLSDLFFL GNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-151215156158MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-151215156158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0099200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2886990.0AK288699.1 Oryza sativa Japonica Group cDNA, clone: J090061C22, full insert sequence.
GenBankAP0028710.0AP002871.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0475H04.
GenBankAP0028730.0AP002873.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0552C05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628164.10.0myb-related protein P
SwissprotP278982e-65MYBP_MAIZE; Myb-related protein P
TrEMBLI1NMA20.0I1NMA2_ORYGL; Uncharacterized protein
STRINGORGLA01G0099200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.14e-63myb domain protein 12
Publications ? help Back to Top
  1. Robbins ML,Sekhon RS,Meeley R,Chopra S
    A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize.
    Genetics, 2008. 178(4): p. 1859-74
    [PMID:18430921]
  2. Sidorenko L,Chandler V
    RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene.
    Genetics, 2008. 180(4): p. 1983-93
    [PMID:18845841]
  3. Robbins ML,Wang P,Sekhon RS,Chopra S
    Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism.
    PLoS ONE, 2009. 4(12): p. e8231
    [PMID:20011605]
  4. Rhee Y,Sekhon RS,Chopra S,Kaeppler S
    Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize.
    Genetics, 2010. 186(3): p. 843-55
    [PMID:20823340]
  5. Morohashi K, et al.
    A genome-wide regulatory framework identifies maize pericarp color1 controlled genes.
    Plant Cell, 2012. 24(7): p. 2745-64
    [PMID:22822204]