PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 353aa MW: 37669.8 Da PI: 5.3118

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA01G0099200.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.9	1.7e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEde+l++++++ G g W++ ++ g+ R++k+c++rw +yl ORGLA01G0099200.1 14 RGRWTKEEDEKLARYIRENGEGAWRSMPKNAGLLRCGKSCRLRWINYL 61 8*****************************99**********97 PP
2	Myb_DNA-binding	40.7	5.3e-13	67	148	1	48
TSSS-HHHHHHHHHHHHHTTTT...................................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...................................tWktIartmgkgRtlkqcksrwqkyl 48 rg+ +++E+++++++++ lG++ W++Ia +++ gRt++++k++w+++l ORGLA01G0099200.1 67 RGNISPQEEDIILNLHATLGNRrmemhtemlsatgfnlaqrkfpmlltddtdgglscLWSLIAGHLP-GRTDNEIKNYWNSHL 148 7899*************************************************************.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-21	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.098	9	65	IPR017930	Myb domain
SMART	SM00717	7.4E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	8.0E-15	14	61	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.63E-20	15	89	IPR009057	Homeodomain-like
CDD	cd00167	1.56E-10	16	61	No hit	No description
PROSITE profile	PS50090	7.863	62	148	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	9.5E-20	65	87	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-9	66	150	IPR001005	SANT/Myb domain
Pfam	PF00249	4.3E-10	67	148	IPR001005	SANT/Myb domain
CDD	cd00167	3.18E-6	71	148	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.5E-20	124	151	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.79E-6	125	151	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MGRAPCCEKV GLRRGRWTKE EDEKLARYIR ENGEGAWRSM PKNAGLLRCG KSCRLRWINY 60 LRADLKRGNI SPQEEDIILN LHATLGNRRM EMHTEMLSAT GFNLAQRKFP MLLTDDTDGG 120 LSCLWSLIAG HLPGRTDNEI KNYWNSHLSR KGYEFLRGGG GGAVVDVDLS KLPGGGKRRG 180 GRTGRSSSGK EKTRTKEKDK APAPEAAHND DGGGGGGGGI DNVSAASHSH REEQAQASAS 240 GLTSDGLEEG PLGLSEEMVS GPVGPVSPKP EVGQDGSSAE SGCCGPSGPS GPTEAVGQDM 300 GDKSMDWDLV GLDDGFANDD MWGSLSWDYG ELVGPDGVHQ GEVLSDLFFL GNL

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MGRAPCCEKV GLRRGRWTKE EDEKLARYIR ENGEGAWRSM PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI SPQEEDIILN LHATLGNRRM EMHTEMLSAT GFNLAQRKFP MLLTDDTDGG  120
LSCLWSLIAG HLPGRTDNEI KNYWNSHLSR KGYEFLRGGG GGAVVDVDLS KLPGGGKRRG  180
GRTGRSSSGK EKTRTKEKDK APAPEAAHND DGGGGGGGGI DNVSAASHSH REEQAQASAS  240
GLTSDGLEEG PLGLSEEMVS GPVGPVSPKP EVGQDGSSAE SGCCGPSGPS GPTEAVGQDM  300
GDKSMDWDLV GLDDGFANDD MWGSLSWDYG ELVGPDGVHQ GEVLSDLFFL GNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	7e-15	12	151	56	158	MYB PROTO-ONCOGENE PROTEIN
1h89_C	7e-15	12	151	56	158	MYB PROTO-ONCOGENE PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA01G0099200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK288699	0.0	AK288699.1 Oryza sativa Japonica Group cDNA, clone: J090061C22, full insert sequence.
GenBank	AP002871	0.0	AP002871.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0475H04.
GenBank	AP002873	0.0	AP002873.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0552C05.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015628164.1	0.0	myb-related protein P
Swissprot	P27898	2e-65	MYBP_MAIZE; Myb-related protein P
TrEMBL	I1NMA2	0.0	I1NMA2_ORYGL; Uncharacterized protein
STRING	ORGLA01G0099200.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP79	38	563

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	4e-63	myb domain protein 12

Publications ? help Back to Top
Robbins ML,Sekhon RS,Meeley R,Chopra S A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize. Genetics, 2008. 178(4): p. 1859-74 [PMID:18430921] Sidorenko L,Chandler V RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene. Genetics, 2008. 180(4): p. 1983-93 [PMID:18845841] Robbins ML,Wang P,Sekhon RS,Chopra S Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism. PLoS ONE, 2009. 4(12): p. e8231 [PMID:20011605] Rhee Y,Sekhon RS,Chopra S,Kaeppler S Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize. Genetics, 2010. 186(3): p. 843-55 [PMID:20823340] Morohashi K, et al. A genome-wide regulatory framework identifies maize pericarp color1 controlled genes. Plant Cell, 2012. 24(7): p. 2745-64 [PMID:22822204]