PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA01G0086500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 167aa MW: 17922 Da PI: 8.7289 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.9 | 3.9e-09 | 69 | 90 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f rtGtCk+Gd+C++ H++ ORGLA01G0086500.1 69 CQHFVRTGTCKFGDSCRYFHPK 90 ********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00451 | 9.2E-4 | 3 | 38 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 3.42E-14 | 4 | 47 | No hit | No description |
Pfam | PF06220 | 1.1E-9 | 5 | 37 | IPR013085 | Zinc finger, U1-C type |
SMART | SM00356 | 1.1E-4 | 65 | 90 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-7 | 67 | 90 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.5E-6 | 68 | 88 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.4E-7 | 68 | 90 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.831 | 68 | 91 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MPLGKYYCDY CEKQFQDTPA ARKRHLDGAQ HHRARALWYD AVRRQELHGG GGGAPPLFHQ 60 PGAAAIGVCQ HFVRTGTCKF GDSCRYFHPK PPPANPGPAP SGPVSGPMAQ QSNIQGSQPN 120 FVGYQAADGS SFSGNILGGH TSWGNLPPSL RPPPEGGYPP FPFVDWG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA01G0086500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071420 | 0.0 | AK071420.1 Oryza sativa Japonica Group cDNA clone:J023090K17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610914.1 | 1e-119 | zinc finger CCCH domain-containing protein 3 | ||||
Swissprot | Q0JP11 | 1e-120 | C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A0D3ELU1 | 1e-118 | A0A0D3ELU1_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1NLX5 | 1e-118 | I1NLX5_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA01G0086500.1 | 1e-119 | (Oryza glaberrima) | ||||
STRING | OBART01G09550.1 | 1e-119 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12617 | 23 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 4e-27 | C3H family protein |
Publications ? help Back to Top | |||
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