PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0085600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 312aa    MW: 33583.9 Da    PI: 6.3777
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0085600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57382.37e-26198796
             DUF573  7 wseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.....aksgkepsfskehdqkifels 92
                       w++e e+++L+G++df+a++g+   +++ d+  fy+ +++++sf+++ksqlveK+rrLKkK++ + ++      +    ++f+++h+  i++l+
  ORGLA01G0085600.1  1 WTDEEELLILRGFLDFTARRGTtfASHQyDTGPFYDEIRRRLSFDFTKSQLVEKLRRLKKKYRLCAARmasspHAAAAGFAFRTPHEGAIYDLA 94
                       *********************99877778***********************************99996666556677889************* PP

             DUF573 93 kkiW 96
                       + iW
  ORGLA01G0085600.1 95 RHIW 98
                       **** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.2E-24198IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
WTDEEELLIL RGFLDFTARR GTTFASHQYD TGPFYDEIRR RLSFDFTKSQ LVEKLRRLKK  60
KYRLCAARMA SSPHAAAAGF AFRTPHEGAI YDLARHIWPP ALKRDGTASD DDDINPAAAA  120
TAAVTMPVAM EDGFGGSAPT PTPTPRGRGG RRVRRRMAQE QEAAALPSAP ALTSTDGAHQ  180
EPLVAAMENS FPQIAQLPPV SETAPMPVTA NGANEEAVRS VLSPLLKEFI TSFAVAGQTG  240
PGMGLNMGFG GAGLNADIAG LGFGIAGPNP GVPSADRWRQ QQILELEVYL KRIELVREQV  300
TAALDELRSS EG
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0085600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644705.20.0probable transcription factor At3g04930
TrEMBLI1NLW60.0I1NLW6_ORYGL; Uncharacterized protein
STRINGORGLA01G0085600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.24e-13DNA-binding storekeeper protein-related transcriptional regulator