PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0077100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 617aa    MW: 67042.5 Da    PI: 7.2419
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0077100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12463509455
                        HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  ORGLA01G0077100.1 463 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 509
                        799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.9E-5060245IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831459508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.79E-15462513No hitNo description
SuperFamilySSF474591.09E-18462525IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-18463522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10463509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16465514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MVMKMEADED GANGGTGGTW TDEDRALTAS VLGTDAFAYL TKGGGAISEG LVAASLPVDL  60
QNRLQELVES DRPGAGWNYA IFWQLSRTKS GDLVLGWGDG SCREPRDGEM GPAASAGSDE  120
AKQRMRKRVL QRLHSAFGGV DEEDYAPGID QVTDTEMFFL ASMYFAFPRR AGGPGQVFAA  180
GVPLWIPNTE RNVFPANYCY RGYLANAAGF RTIVLVPFET GVLELGSMQQ VAESSDTLQT  240
IRSVFAGAIG NKAGVQRHEG SGPTDKSPGL AKIFGKDLNL GRPSAGPGTG VSKADERSWE  300
QRTGGGSSLL PNVQRGLQNF TWSQARGLNS HQQKFGNGIL IVSNEATPRN NGVVDSSTAT  360
QFQLQKAPPL QKLPQLQKSH QLVKPQQLVS QQQLQPQAPR QIDFSAGTSS KPGVLTKKPA  420
GIDGDGAEVD GLCKDEGPPP ALEDRRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY  480
ALRAVVPNIS KMDKASLLGD AITYITDLQK KLKEMEVERE RLIESGMIDP RDRTPRPEVD  540
IQVVQDEVLV RVMSPMESHP VRAIFQAFEE AEVHAGESKI TSNNGTAVHS FIIKCPGAEQ  600
QTREKVIAAM SRVMNSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-27457519264Transcription factor MYC2
5gnj_B2e-27457519264Transcription factor MYC2
5gnj_E2e-27457519264Transcription factor MYC2
5gnj_F2e-27457519264Transcription factor MYC2
5gnj_G2e-27457519264Transcription factor MYC2
5gnj_I2e-27457519264Transcription factor MYC2
5gnj_M2e-27457519264Transcription factor MYC2
5gnj_N2e-27457519264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1444452RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0077100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621308.10.0transcription factor bHLH13
TrEMBLI1NLN10.0I1NLN1_ORYGL; Uncharacterized protein
STRINGORGLA01G0077100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.39e-72bHLH family protein