PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0065100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 268aa    MW: 27331.9 Da    PI: 8.9552
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0065100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-1281127354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++h+e+ErrRR+riN  +++Lr+++P        K++Ka+ L ++v ++k L
  ORGLA01G0065100.1  81 KSHSEAERRRRERINAHLATLRTMVPCT-----DKMDKAALLAEVVGHVKRL 127
                        58*************************7.....6*************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.95878127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-1081127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-1382132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-1482129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-1184133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.0E-6167235No hitNo description
SuperFamilySSF550212.29E-6168235No hitNo description
CDDcd048732.53E-5168234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGSAPFGDAV AGGGLYEYQG YHGGFAGGHG LGQPAGRAPA LDDGETEGMD ASAAAAAVAA  60
MEMAKRNCGG GREEKAAMAL KSHSEAERRR RERINAHLAT LRTMVPCTDK MDKAALLAEV  120
VGHVKRLKSA AARVGRRATV PSGADEVAVD EASATGGGGE GPLLLRATLS CDDRADLFVD  180
VKRALQPLGL EVVGSEVTTL GGRVRLAFLV SCGSRGGAAA AAMASVRQAL QSVLDKASSG  240
FDFAPRAASL LGSKRRKVST FESSSSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18691ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0065100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0685930.0AK068593.1 Oryza sativa Japonica Group cDNA clone:J013152L23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879685.11e-135transcription factor bHLH30
TrEMBLI1NLB10.0I1NLB1_ORYGL; Uncharacterized protein
STRINGORGLA01G0065100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110112938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-30bHLH family protein