PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0022600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family RAV
Protein Properties Length: 372aa    MW: 39879.1 Da    PI: 10.2252
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0022600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2422.3e-1372120155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+ykGV   + +grW A+I++      r +r++lg+f  +e Aa+a++ a+++++g
  ORGLA01G0022600.1  72 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEEAAARAYDVAALRYRG 120
                        78****9888.8*********......44*************************98 PP
2B395.63.4e-30187284186
                        EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                        f+k+ tpsdv+k++rlv+pk++ae+h            +  + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD++
  ORGLA01G0022600.1 187 FEKAVTPSDVGKLNRLVVPKQHAEKHfplrhaassdsaSAATGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTI 278
                        89***************************99999888755566999********************************************** PP

                        EEEE-S CS
                 B3  81 vFkldg 86 
                        vF+++ 
  ORGLA01G0022600.1 279 VFSRSA 284
                        **9664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-872120IPR001471AP2/ERF domain
CDDcd000184.15E-1472128No hitNo description
SuperFamilySSF541711.63E-1772128IPR016177DNA-binding domain
PROSITE profilePS5103222.04973128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-2173128IPR001471AP2/ERF domain
SMARTSM003809.2E-2473134IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.2E-39182301IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-30184295IPR015300DNA-binding pseudobarrel domain
CDDcd100171.93E-28185283No hitNo description
SMARTSM010191.3E-23187298IPR003340B3 DNA binding domain
PROSITE profilePS5086314.071187298IPR003340B3 DNA binding domain
PfamPF023621.6E-27187284IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGVVSFSSTS SGASTATTES GGAVRMSPEP VVAVAAAAQQ LPVMKGVDSA DEVVTSKPAA  60
AAAAAAVAQQ SSRYKGVVPQ PNGRWGAQIY ERHARVWLGT FPDEEAAARA YDVAALRYRG  120
RDAATNFPGA AASAAELAFL AAHSKAEIVD MLRKHTYADE LRQGLRRGRG MGARAQPTPS  180
WAREPLFEKA VTPSDVGKLN RLVVPKQHAE KHFPLRHAAS SDSASAATGK GVLLNFEDGE  240
GKVWRFRYSY WNSSQSYVLT KGWSRFVREK GLRAGDTIVF SRSAYGPDKL LFIDCKKNNA  300
AVAATTTCAG DERPTTTTSG AEPRVVRLFG VDIAGGDCRK RERAVEMGQE AFLLKRQCVV  360
HQRTPVLGAL LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-4918429611115DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0022600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2116060.0AC211606.1 Oryza glaberrima clone OG_BBa0048H17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622259.10.0AP2/ERF and B3 domain-containing protein Os01g0141000
SwissprotQ9AWS00.0Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLI1NK360.0I1NK36_ORYGL; Uncharacterized protein
STRINGORGLA01G0022600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-79RAV family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]