PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0022400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family RAV
Protein Properties Length: 326aa    MW: 36268.4 Da    PI: 5.9656
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0022400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.14.5e-1369117155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+ykGV   + +grW A+I++      r +r++lg+f  +e Aa+a++ a+++++g
  ORGLA01G0022400.1  69 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEEAAARAYDVAALRFRG 117
                        78****9888.8*********......44*************************98 PP
2B391.18.3e-29182275185
                        EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                        f+k+ tpsdv+k++rlv+pk+ ae+h         +    +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL+ gD+v F+
  ORGLA01G0022400.1 182 FEKAVTPSDVGKLNRLVVPKQQAERHfpfplrrhsSDAAGKGVLLNFEDGDGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRPGDTVAFS 273
                        89*****************************999855667999************************************************9 PP

                        E- CS
                 B3  84 ld 85 
                        ++
  ORGLA01G0022400.1 274 RS 275
                        65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-869117IPR001471AP2/ERF domain
CDDcd000182.66E-1369123No hitNo description
SuperFamilySSF541715.82E-1669123IPR016177DNA-binding domain
PROSITE profilePS5103221.07470125IPR001471AP2/ERF domain
SMARTSM003809.2E-2470131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-1970123IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.4E-37178295IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-29179291IPR015300DNA-binding pseudobarrel domain
CDDcd100172.05E-28180275No hitNo description
SMARTSM010197.1E-20182292IPR003340B3 DNA binding domain
PfamPF023628.1E-26182276IPR003340B3 DNA binding domain
PROSITE profilePS5086313.394182291IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEQEAAMVVF SCNSGSGGSS STTDSKQEEE EEEEEEEELA AMEEDELIHV VQAAELRLPS  60
STTATRPSSR YKGVVPQPNG RWGAQIYERH ARVWLGTFPD EEAAARAYDV AALRFRGRDA  120
VTNRAPAAEG ASAGELAFLA AHSKAEVVDM LRKHTYDDEL QQGLRRGSRA QPTPRWAREP  180
LFEKAVTPSD VGKLNRLVVP KQQAERHFPF PLRRHSSDAA GKGVLLNFED GDGKVWRFRY  240
SYWNSSQSYV LTKGWSRFVR EKGLRPGDTV AFSRSAAAWG TEKHLLIDCK KMERNNLATV  300
DAIAVDDDAR VVVKLFGVDI AGDNTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-4817929711122DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0022400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2116060.0AC211606.1 Oryza glaberrima clone OG_BBa0048H17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878463.10.0putative AP2/ERF and B3 domain-containing protein Os01g0140700
SwissprotQ9AWS70.0Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLI1NK340.0I1NK34_ORYGL; Uncharacterized protein
STRINGORGLA01G0022400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-92related to ABI3/VP1 2