PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0007400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 287aa    MW: 29975.7 Da    PI: 7.834
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0007400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.81.1e-09204247755
                        HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        ++ + RR+ri +++  L++l+P+      +K++ +++LekA++Y+k Lq
  ORGLA01G0007400.1 204 AAAKVRRERISERLKVLQDLVPNG-----TKVDLVTMLEKAINYVKFLQ 247
                        67799*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-14195257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.39E-12197251No hitNo description
PROSITE profilePS5088814.983197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-12198255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6204247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MMAAQASSKR GMLLPREAVL YDDEPSMPLE ILGYHGNGVG GGGCVDADYY YSWSGSSSSS  60
SSSVLSFDQA AVGGGGCARQ LAFHPGGDDD DCAMWMDAAA GAMVENTSVV AGGGNNYCHR  120
LQFHGGAAGF GLASPGSSVV DNGLEIHESN VSKPPPPAAK KRACPSGEAR AAGKKQCRKG  180
SKPNKAASAS SPSPSPNKEQ PQSAAAKVRR ERISERLKVL QDLVPNGTKV DLVTMLEKAI  240
NYVKFLQLQV KVLATDEFWP AQGGKAPELS QVKDALDAIL SSQHPNK
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0007400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085870.0AK108587.1 Oryza sativa Japonica Group cDNA clone:002-146-B03, full insert sequence.
GenBankHQ8588580.0HQ858858.1 Oryza sativa Japonica Group isolate UT1665 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643698.11e-176transcription factor bHLH83
TrEMBLA0A0D3EIU10.0A0A0D3EIU1_9ORYZ; Uncharacterized protein
TrEMBLI1NJN40.0I1NJN4_ORYGL; Uncharacterized protein
STRINGORGLA01G0007400.10.0(Oryza glaberrima)
STRINGOBART01G00850.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.13e-46ROOT HAIR DEFECTIVE6