![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORGLA01G0005200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 228aa MW: 24613.7 Da PI: 9.9823 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.5 | 5.8e-09 | 42 | 109 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C..................TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.as...............kapskKlsKaeiLekAveYIksLq 55 + +E++RR +++ +L +l+P a+ + +++ ++ + Le+A YIk+L+ ORGLA01G0005200.1 42 ERKDVEKNRRLHMKGLCLKLSSLIPAaAPrrhhhhystssssppSSTKEAVTQLDHLEQAAAYIKQLK 109 56899*********************555*************76666666****************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.585 | 38 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.45E-9 | 40 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.5E-11 | 40 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-6 | 42 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0036 | 44 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 228 aa Download sequence Send to blast |
MKSRKNSTTS TKAAGSCHTS SSGGGGGGGG GNCYSSSSSK MERKDVEKNR RLHMKGLCLK 60 LSSLIPAAAP RRHHHHYSTS SSSPPSSTKE AVTQLDHLEQ AAAYIKQLKG RIDELKKRKQ 120 QAAALTTSTS NGRGGGMPVV EVRCQDGTLD VVVVSEAIGE ERERERERAV RLHEVIGVLE 180 EEGAEVVNAS FSVVGDKIFY TLHSQALCSR IGLDASRVSH RLRNLLQY |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | ORGLA01G0005200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CT834729 | 0.0 | CT834729.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117C11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622948.1 | 1e-118 | transcription factor bHLH168 | ||||
TrEMBL | A0A0D3EIR3 | 1e-165 | A0A0D3EIR3_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1NJL2 | 1e-165 | I1NJL2_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA01G0005200.1 | 1e-166 | (Oryza glaberrima) | ||||
STRING | OBART01G00620.1 | 1e-166 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP829 | 36 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G10585.1 | 1e-18 | bHLH family protein |