PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0003200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 388aa    MW: 41816.1 Da    PI: 8.6522
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0003200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.46.9e-052753131255
                        HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  ORGLA01G0003200.1 275 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 313
                        7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.528263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-11273325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-5273317No hitNo description
Gene3DG3DSA:4.10.280.108.6E-9277320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MMASSSSSSS LCDTNHLFQD DLPWPSMPFA LAPNTFGLNH QWSQPPMLSS STDQLSSYEL  60
ESLQSVQSQL AAAPPTLSPH LQAHQLSTVL MMQELGFQWS SCAAPADQHS IASSMNNNNN  120
SNVMMNEEEL RPRPDQSLIS NPRSCSATTL LPPPHLHLDG AVLPSINVSR LQKPAAGDEP  180
PQICCKRQAA AAVVGHSSIR DEHVPCPYAG PPAHLIQGPS NTLQMKRNTN AAAQGRGGRH  240
GSSTEHRSST ALPPSSKKPR LESHSSSMLP SFKVRKEKLG DRIAALQQLV SPFGKTDTAS  300
VLMEAIGYIK FLQDQVETLS GPYLRSSKNS KKLACRAAQQ QRKGTSNGGD AAAKLDLRSR  360
GLCLVPLSCT SYVTNENGVW PPPNFRGN
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0003200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1194930.0AK119493.1 Oryza sativa Japonica Group cDNA clone:001-134-D09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627200.10.0uncharacterized protein LOC4326301
TrEMBLA0A0D3EIP00.0A0A0D3EIP0_9ORYZ; Uncharacterized protein
TrEMBLI1NJJ20.0I1NJJ2_ORYGL; Uncharacterized protein
STRINGORGLA01G0003200.10.0(Oryza glaberrima)
STRINGOBART01G00400.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.17e-46bHLH family protein