PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G17950.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 331aa    MW: 34092.3 Da    PI: 8.4784
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G17950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.51.5e-15170216455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h ++ErrRR++iN++f eL +++P +     kK++Ka+iL  Av+Y+k+Lq
  OPUNC12G17950.1 170 DHIIAERRRREKINQRFIELSTVIPGL-----KKMDKATILGDAVKYVKELQ 216
                      5999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.993166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-18170226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-19170224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-13171216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.85E-16171220No hitNo description
SMARTSM003534.2E-17172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDDSSFFMQW AMDTLHQLPS DATGAAAEAY ATDVGGDSGG AAFPSLQALR NASAAGGGGG  60
FRDLTVQVDQ VHRASSWSSS DSPGGAATAT GWSTHVTSGG RGHRPMSWNF SAASAQPTTE  120
DSGGGGGGGG VPAPQAMETA TARVAVGAGK KGGGGSSGSA AAAAPGYVQD HIIAERRRRE  180
KINQRFIELS TVIPGLKKMD KATILGDAVK YVKELQEKVK TMEEDGGGGG RAAMVVRKSC  240
SRQSGDGGEG STATSRVPEI EARLSERSVL VRVHCGNARG LLVRLLSEVE ELRLGITHTS  300
VMPFPASTVI ITITAKASYI ALLIYMCIKL P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-15170225863Transcription factor MYC2
5gnj_B7e-15170225863Transcription factor MYC2
5gnj_E7e-15170225863Transcription factor MYC2
5gnj_F7e-15170225863Transcription factor MYC2
5gnj_G7e-15170225863Transcription factor MYC2
5gnj_I7e-15170225863Transcription factor MYC2
5gnj_M7e-15170225863Transcription factor MYC2
5gnj_N7e-15170225863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179ERRRRE
2175180RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7139051e-179AL713905.6 Oryza sativa chromosome 12, . BAC OJ1584_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL7318871e-179AL731887.5 Oryza sativa chromosome 12, . BAC OJ1559_C07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-179AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618734.11e-145transcription factor NAI1 isoform X1
RefseqXP_025877790.11e-145transcription factor NAI1 isoform X1
RefseqXP_025877791.11e-145transcription factor NAI1 isoform X1
TrEMBLA0A0E0MPX50.0A0A0E0MPX5_ORYPU; Uncharacterized protein
STRINGOPUNC12G17950.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-30bHLH family protein