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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
OPUNC12G17870.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
NAC |
| Protein Properties |
Length: 360aa MW: 39971.4 Da PI: 7.7796 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC12G17870.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 151.3 | 4.5e-47 | 35 | 179 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..............kvkaeekew.yfFskrdkkyatgkrknratks 80
pGfrFhPtd+elv +yL++kve+k++++ e+ike+diyk++PwdLpk + +a eke+ yfF+ r +ky+++ r+nr+t s
OPUNC12G17870.1 35 FPGFRFHPTDQELVGFYLTRKVEKKPFSI-EIIKEIDIYKHDPWDLPKvshgvalqgsssssSSTAAEKECgYFFCLRGRKYRNSIRPNRVTGS 127
69***************************.89***************7689999998887653334666778********************** PP
NAM 81 gyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
g+Wkatg dk+++++ +g +glkk+Lv+y+g+a +g+ktdW+mhe+rl
OPUNC12G17870.1 128 GFWKATGIDKPIYDSvasgGGDCIGLKKSLVYYRGSAGRGTKTDWMMHEFRL 179
**************988877888***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 360 aa
Download sequence Send
to blast |
MEEEKRLERI IKESDSPISP GGGAALLAED DDLVFPGFRF HPTDQELVGF YLTRKVEKKP 60
FSIEIIKEID IYKHDPWDLP KVSHGVALQG SSSSSSSTAA EKECGYFFCL RGRKYRNSIR 120
PNRVTGSGFW KATGIDKPIY DSVASGGGDC IGLKKSLVYY RGSAGRGTKT DWMMHEFRLP 180
SSSTSDHLQD ASETWTICRI FKRSMTYTKG RAAAASMNKR SHQLQHIHQQ QQYYYHEVVH 240
DHHRRHLQHY AGSASVALAA ANSVDDVIDS SDAETTTRSQ SQSQSHLVAD IRHRQSPFML 300
DFHAGTTAAS TSAAAVTAST AAGWSELVSF RDGRSSSGSS WDELGRIMDI STNSANNYYL
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-43 | 36 | 203 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-43 | 36 | 203 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-43 | 36 | 203 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-43 | 36 | 203 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-43 | 36 | 203 | 22 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 2e-43 | 36 | 203 | 22 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 2e-43 | 36 | 203 | 22 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 2e-43 | 36 | 203 | 22 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 2e-43 | 36 | 203 | 22 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 2e-43 | 36 | 203 | 22 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 2e-43 | 36 | 203 | 22 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 2e-43 | 36 | 203 | 22 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 2e-43 | 36 | 203 | 19 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 2e-43 | 36 | 203 | 19 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | CP012620 | 1e-124 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
