PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC12G17240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YA | ||||||||
Protein Properties | Length: 316aa MW: 34209.8 Da PI: 8.7016 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 96.6 | 2.8e-30 | 150 | 206 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d+p+YVNaKQy +I++RR++R k+e+e++l k+rkpylheSRh hA+rR+RgsgGrF OPUNC12G17240.1 150 DAPIYVNAKQYAAIIRRRHARSKAERENRL-VKARKPYLHESRHLHAMRRARGSGGRF 206 68****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.1E-33 | 148 | 209 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.661 | 149 | 209 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.4E-22 | 152 | 174 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.5E-27 | 152 | 206 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.4E-22 | 183 | 206 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MMSFNKSHEG FGQVAAVASL ANNGGGSLPW LLYGEPLGQG KPAMSPEGVV PRAQTPLDPP 60 PVPAMDRGVP EILNFSMVPG KGEKGSEHST TIALQSPFAE YNGCFELGLG QSVVPSNYPY 120 ADQHYGLLSP CGVRSVPSGR ILIPPNMPAD APIYVNAKQY AAIIRRRHAR SKAERENRLV 180 KARKPYLHES RHLHAMRRAR GSGGRFLNTK KETNGKTTGG GRKVMDIIIP PLRPAASPSS 240 EIQHSEQCNP SSVSSLSGSE VSSIYEHEDV DHFHGFEHLR THFFTPLPSL MDLEHGAGNP 300 FKWTAASDGC CDLLKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-16 | 150 | 214 | 2 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
4g91_A | 9e-17 | 150 | 208 | 2 | 61 | HAPB protein |
4g92_A | 9e-17 | 150 | 208 | 2 | 61 | HAPB protein |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288032 | 0.0 | AB288032.1 Oryza sativa Japonica Group OsHAP2F mRNA for HAP2 subunit of HAP complex, complete cds. | |||
GenBank | AK073742 | 0.0 | AK073742.1 Oryza sativa Japonica Group cDNA clone:J033067G24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618449.1 | 0.0 | nuclear transcription factor Y subunit A-10 | ||||
Refseq | XP_015618450.1 | 0.0 | nuclear transcription factor Y subunit A-10 | ||||
TrEMBL | A0A0E0MPP4 | 0.0 | A0A0E0MPP4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC12G17240.2 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2307 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.3 | 4e-36 | nuclear factor Y, subunit A10 |