PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G16660.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 471aa    MW: 50598.4 Da    PI: 6.3248
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G16660.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.93.3e-17278324455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  OPUNC12G16660.2 278 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 324
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.60E-19271328No hitNo description
Gene3DG3DSA:4.10.280.105.0E-21271331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-21272337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.559274323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-14278324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-19280329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MNQFVPDWNT TSMGDGFAPL GEDDGLVELL WCNGHVVMHS QAPRKPPRPE RTAATVAAMA  60
EDESASWFQY PVDDVLEKDL FTELFGEMTT AGGGGGDVRR AACKEERGAV TAFQSRMMPP  120
PWPAREKAEF RDVDDVCGIS EVVMAKMEGE VKVAAAEAAG GESSMLTIGS SICGSNHVQT  180
PPGPAQPPPS LGNGKVGGAA ARRAHDTATV ASSSMRSRSC TAKTEPHDVA AGVDKRKQRD  240
AATESWSPSE DVEFESAAVT CSPAQKTTTA KRRRAAEVHN LSERRRRDRI NEKMKALQEL  300
IPHCNKTDKA SMLDEAIEYL KSLQLQLQMM WMGGGMAPPA VMFPAAGVHQ YMQRMGAVGM  360
GPPHMASLPR MPPFMAPPPA AVQSSPVSHM PAVSMADPYA RCLAVDHLQP PSPMHYLQGM  420
SFYQLQQNTA ALPPPAGSLP PAATEQPPTP DDILHKKYDN CSKPESKGGT S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271286RRRAAEVHNLSERRRR
2282287ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0667630.0AK066763.1 Oryza sativa Japonica Group cDNA clone:J013074J19, full insert sequence.
GenBankCT8297130.0CT829713.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA240D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618078.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2
RefseqXP_015618079.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2
TrEMBLA0A0E0MPG30.0A0A0E0MPG3_ORYPU; Uncharacterized protein
STRINGOPUNC12G16660.20.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.16e-30phytochrome interacting factor 3-like 5