PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G16220.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 370aa    MW: 38982.1 Da    PI: 10.5352
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G16220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.3e-31304361359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh+
  OPUNC12G16220.1 304 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGEHNHT 361
                      9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.0E-18255300IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.807.6E-34290361IPR003657WRKY domain
PROSITE profilePS5081130.148297360IPR003657WRKY domain
SuperFamilySSF1182905.49E-27300361IPR003657WRKY domain
SMARTSM007744.4E-38302362IPR003657WRKY domain
PfamPF031065.1E-27304360IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEEEVEAANR AAVESCHRVL ALLSQQQDPA LLRSIASETG EACAKFRKVV SLLGNGGGGA  60
GAGGGGRGGG GGHARGRMAG RSRPAAVLRE KGFLESSSGG GGGGAQLGMM MSGAATPSTS  120
SAAHLRNRIA GGAPPDSLRG LDLVSSSSKG GAHQFDPPKL VQPLSVQFQF GATAHRYPFQ  180
QHQHQQKLQA EMFKRSNSGI SLKFDSPSAT GTMSSAFMSS LSMDGSVASL EGKPPFHLIG  240
GPVASDPVNA HHAPKRRCTG RGEDGNGKCA TTGRCHCSKR RKLRIKRSIK VPAISNKIAD  300
IPPDEYSWRK YGQKPIKGSP HPRGYYKCSS VRGCPARKHV ERCVDDPAML IVTYEGEHNH  360
TRLPTQSAQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-20295364775WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16471GGRGGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0706480.0AK070648.1 Oryza sativa Japonica Group cDNA clone:J023062B16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620342.10.0protein WRKY1
TrEMBLA0A0E0MPB10.0A0A0E0MPB1_ORYPU; Uncharacterized protein
STRINGOPUNC12G16220.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.12e-72WRKY DNA-binding protein 21