PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G15720.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 303aa    MW: 32816.1 Da    PI: 4.7083
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G15720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.14.8e-112312711055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+RR+riN+++ +L+ l+P+      +K++ +++Le+Av+Y+k Lq
  OPUNC12G15720.1 231 RKRRERINERLKTLQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 271
                      9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.205221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14223287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-13226284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-12227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.11E-13230275No hitNo description
PfamPF000102.0E-8231271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEAGGLIADM SWTVFDLPSH GDESEMMAQL LSAFPIHGEE EGHEQLPWFD QSSNPCYYSC  60
NGSSIAYSNS NASSLAAPSE YDGYCFSDSN EALGVSSSIG PHDLSMAQVQ GATEFLNVIP  120
NHSLDSFGNG EPSREDLDSA SGTNKRKHSA EEFDGQTRGS KCTRKGEPKR GKKAKQTVEK  180
DASVTIQNGS CSTSDNDSSS SQEAADAGAT SKGKSRAGRG AATDPQSLYA RKRRERINER  240
LKTLQNLVPN GTKVDISTML EEAVHYVKFL QLQIKLLSSD EMWMYAPIAY NGMNIGLDLN  300
IDT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL9548520.0AL954852.5 Oryza sativa chromosome 12, . BAC OJ1573_A06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619496.10.0transcription factor bHLH85
TrEMBLA0A0E0MP510.0A0A0E0MP51_ORYPU; Uncharacterized protein
STRINGOPUNC12G15720.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.14e-52bHLH family protein