![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC12G15550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 394aa MW: 41629.2 Da PI: 4.3699 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.4e-19 | 51 | 100 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g OPUNC12G15550.1 51 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 100 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.94E-30 | 50 | 107 | No hit | No description |
SMART | SM00380 | 4.6E-35 | 51 | 114 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.6E-14 | 51 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-19 | 51 | 108 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-27 | 51 | 107 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.559 | 51 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-8 | 52 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-8 | 74 | 90 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 394 aa Download sequence Send to blast |
MATARVASPS TDRKRKASED DIDAAYDVGA AVLTSPPSFA SAPQPARGRK RFVGVRQRPS 60 GRWVAEIKDT IQKIRVWLGT FDTAEEAARA YDEAACLLRG ANTRTNFWPR PSPPPAAAVV 120 PPPENTTTTT TPALPSKVTN LLLLRLKARN QQLVNDDVAA APQEAGALLQ LQQTPASCQE 180 VFVHGHSEEY AFHVDDFLSD ECSNEHSGDS SLGLDEEEEV EEEEEDELDF QFMDVAPAAS 240 AAGGLGGEGA LCSPFEMVAA ELGGAVEAAA AHDAMRQMDY ERKISASLYA LSGVSECLRI 300 RAAAGATAAA ARDHLTGLRE ACRKKQKFAA AAAAPPPQQQ EPSPPPREAE AAAEDGMGCQ 360 EESSGGGMSE TASGGDGDVL LWSSLDLAPI CHMA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619512.2 | 1e-156 | ethylene-responsive transcription factor ERN1 | ||||
TrEMBL | A0A0E0MP24 | 0.0 | A0A0E0MP24_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC12G15550.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5482 | 30 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G19790.1 | 5e-22 | related to AP2 11 |