PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC12G15290.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 1045aa MW: 114311 Da PI: 4.5912

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC12G15290.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.3e-05	694	715	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk F+r+ nL +H ++ OPUNC12G15290.1 694 PCQFCGKNFKRRGNLLNHELNC 715 6*****************8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	6.9	10	31	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	53	282	302	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.39	693	727	IPR007087	Zinc finger, C2H2
SMART	SM00355	81	693	713	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1045 aa Download sequence Send to blast
MASDVPQGSL QCHFCDMNSR DRGNLVKHER HCKNNPDAHI RTESPGNAQK RTARIPVLPE 60 QCVKNPVSDY SHGGINDDLP KVPLTLMEKL AATILCTLKT RGSRRATCSD DEPGTSNSDD 120 GAAANNPDQV LTTCSDKSSS SVEYYGGDEV RRVSASPIVG MEEDDLNQNV GRQGVTNCVD 180 DSDVIQKQEQ KPDLSDLVVI KQQNMKTGTN IPEHRDSSVM QMQNEKLGLN LLPCNDSSGQ 240 EVPTLSVSST DVLNALVPND TDSDEETETV NEMASDVPQG YLQCHFCGTN FKRRSYEKHQ 300 QHCKYNPDAL KRQNLSASSI PTSARRARHS EMASDGPQEN CQCSFCHKDF EGRRSCAEHE 360 LQCKNNPEVH SQTEPSGNAQ GGIGILGVHV PRKKRTARNQ PLPEQHLKKP ASDYARRGTS 420 DAPETPPKPT TSEVKVDSAI NAPDINIPEH KDPSVMQKQK KKLDLNLQPH SDSSDKEGQA 480 DSFSSIDDLS TIDTNSDKQK KAITGGATAD TNIPEHKDPS ATQMQNELDL NLPPHNDSFS 540 SMDDLNALVT ADTNSDKEKK TDNAGVDISI PDHKDPSVTQ MQNNLDLNLP PHDNSFSSMD 600 DLNALVPADT NSDKEKKTDN GGIPADANSD KEKRTDNCSV PTGTNSVKEK KTDNGGVDTN 660 IPDHRDPSAM QMKNKLDLNL PPLNDEMTSE WDSPCQFCGK NFKRRGNLLN HELNCKYIPD 720 AHTQTESPGN AQGRKDILGF HIPKEKRTVP AFPASDHAQG GINGETISEV KADRDPEEET 780 DVLEALLLLK EQPAYPGEDT FSDDEPGAGN LDDEPAASNP DQVLTTCSDK ISSSVECYGG 840 DERRVGARAI AGVEEDDLNR NVGCQGVTGC VDDSDLQKQK RKPDLSVADL RDLVEMQQQN 900 VKADINIRDR EHPSVMKIQN EKVDLNLLPH KNRSDHEVPT LSVSSVDDPD ALVSADTNSD 960 KEIETVNSGI DINIPEQRES SVMQMQKEKL GLNLPPRNDS SGHEVPTLSV SSTDDLTSLA 1020 PTDTISDKDT NSNVADSFIH CPEQE

Sequence ? help Back to Top

Protein Sequence Length: 1045 aa Download sequence Send to blast

MASDVPQGSL QCHFCDMNSR DRGNLVKHER HCKNNPDAHI RTESPGNAQK RTARIPVLPE  60
QCVKNPVSDY SHGGINDDLP KVPLTLMEKL AATILCTLKT RGSRRATCSD DEPGTSNSDD  120
GAAANNPDQV LTTCSDKSSS SVEYYGGDEV RRVSASPIVG MEEDDLNQNV GRQGVTNCVD  180
DSDVIQKQEQ KPDLSDLVVI KQQNMKTGTN IPEHRDSSVM QMQNEKLGLN LLPCNDSSGQ  240
EVPTLSVSST DVLNALVPND TDSDEETETV NEMASDVPQG YLQCHFCGTN FKRRSYEKHQ  300
QHCKYNPDAL KRQNLSASSI PTSARRARHS EMASDGPQEN CQCSFCHKDF EGRRSCAEHE  360
LQCKNNPEVH SQTEPSGNAQ GGIGILGVHV PRKKRTARNQ PLPEQHLKKP ASDYARRGTS  420
DAPETPPKPT TSEVKVDSAI NAPDINIPEH KDPSVMQKQK KKLDLNLQPH SDSSDKEGQA  480
DSFSSIDDLS TIDTNSDKQK KAITGGATAD TNIPEHKDPS ATQMQNELDL NLPPHNDSFS  540
SMDDLNALVT ADTNSDKEKK TDNAGVDISI PDHKDPSVTQ MQNNLDLNLP PHDNSFSSMD  600
DLNALVPADT NSDKEKKTDN GGIPADANSD KEKRTDNCSV PTGTNSVKEK KTDNGGVDTN  660
IPDHRDPSAM QMKNKLDLNL PPLNDEMTSE WDSPCQFCGK NFKRRGNLLN HELNCKYIPD  720
AHTQTESPGN AQGRKDILGF HIPKEKRTVP AFPASDHAQG GINGETISEV KADRDPEEET  780
DVLEALLLLK EQPAYPGEDT FSDDEPGAGN LDDEPAASNP DQVLTTCSDK ISSSVECYGG  840
DERRVGARAI AGVEEDDLNR NVGCQGVTGC VDDSDLQKQK RKPDLSVADL RDLVEMQQQN  900
VKADINIRDR EHPSVMKIQN EKVDLNLLPH KNRSDHEVPT LSVSSVDDPD ALVSADTNSD  960
KEIETVNSGI DINIPEQRES SVMQMQKEKL GLNLPPRNDS SGHEVPTLSV SSTDDLTSLA  1020
PTDTISDKDT NSNVADSFIH CPEQE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012620	0.0	CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619004.1	0.0	uncharacterized protein LOC4352628
Refseq	XP_015619005.1	0.0	uncharacterized protein LOC4352628
Refseq	XP_015619006.1	0.0	uncharacterized protein LOC4352628
Refseq	XP_015619007.1	0.0	uncharacterized protein LOC4352628
TrEMBL	A0A0E0MNZ8	0.0	A0A0E0MNZ8_ORYPU; Uncharacterized protein
STRING	OPUNC12G15290.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15758	11	11