PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G12380.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 306aa    MW: 31706.5 Da    PI: 8.9822
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G12380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.5e-153986148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+lv +  + G g+W+ +ar  g+ R++k+c++rw +yl
  OPUNC12G12380.1 39 KGLWSPEEDEKLVAYMLRSGQGSWSDVARNAGLQRCGKSCRLRWINYL 86
                     678*******************************************97 PP
2Myb_DNA-binding52.11.5e-1692135146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E++l+v++++ lG++ W+ Ia++++ gRt++++k++w++
  OPUNC12G12380.1  92 RGAFSPQEEDLIVNLHAILGNR-WSQIAARLP-GRTDNEIKNFWNS 135
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.863486IPR017930Myb domain
SuperFamilySSF466898.2E-2937133IPR009057Homeodomain-like
SMARTSM007178.7E-113888IPR001005SANT/Myb domain
PfamPF002491.9E-133986IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-224093IPR009057Homeodomain-like
CDDcd001671.89E-94286No hitNo description
PROSITE profilePS5129424.97187141IPR017930Myb domain
SMARTSM007171.3E-1591139IPR001005SANT/Myb domain
PfamPF002494.9E-1592135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2594142IPR009057Homeodomain-like
CDDcd001671.73E-1194134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MRKPDCGGAA KGGGVGVVGG NSNNAGTAAM AAAAVKVRKG LWSPEEDEKL VAYMLRSGQG  60
SWSDVARNAG LQRCGKSCRL RWINYLRPDL KRGAFSPQEE DLIVNLHAIL GNRWSQIAAR  120
LPGRTDNEIK NFWNSTIKKR LKTSSSSASA SASPATTDCA SPPEHKLGAV VDAAGQLDLA  180
GGGAPDDVVV GTTTAMKGMW VDSSSSSSSS SSMQSRPSIM AAAVGRSYGG LLPLPDQVCG  240
GVDTPPPFFH DHSISFKQGS SHSHHALLHG GYYGSTHAIA AMDGSSFIGS GGDHHSSSIL  300
FGAAMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28391437110B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00599PBMTransfer from AT5G12870Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6340840.0JN634084.1 Oryza sativa Japonica Group secondary wall MYB46 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619488.11e-131transcription factor MYB83
TrEMBLA0A0E0MMY90.0A0A0E0MMY9_ORYPU; Uncharacterized protein
STRINGOPUNC12G12380.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98213545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.13e-63myb domain protein 46