PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC12G08610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 186aa MW: 19975.5 Da PI: 11.2108 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.2 | 6.5e-16 | 19 | 65 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i+ + +r vtf+kRr g++KK EL L +a +av++fs+t++ y + OPUNC12G08610.1 19 IDTNDRRRVTFAKRRCGLFKKVAELALLIGASIAVVVFSETNRAYAF 65 778899************************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.39 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.8E-19 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.05E-19 | 10 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.8E-14 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-17 | 19 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.8E-14 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.8E-14 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MRPPGRTSKG RHHIEIRLID TNDRRRVTFA KRRCGLFKKV AELALLIGAS IAVVVFSETN 60 RAYAFGDPSV DAVVLSYAPV PGEAAAAAPV HRGDGLGEDV DLEELRRAVE ETSAEVAASR 120 RRSCRRRPRG GSGGRSTWTR SGRLCSQSSP ERSRSSGTTS TATPAAVEAA AVGDSRSHAL 180 FLQLHL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025877889.1 | 2e-53 | LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A0E0MLN5 | 1e-129 | A0A0E0MLN5_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC12G08610.1 | 1e-129 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2833 | 30 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72350.1 | 2e-17 | M-type_MADS family protein |