PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G07790.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 1384aa    MW: 153668 Da    PI: 7.8739
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G07790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.0003612651288122
                       EEET..TTTEEESSHHHHHHHHHH CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt 22  
                       ++C    C++sFs++ +L  H r 
  OPUNC12G07790.1 1265 FPCDieGCDMSFSTQQDLLLHKRD 1288
                       789999***************985 PP
2zf-C2H211.90.0007213481374123
                       EEET..TTTEEESSHHHHHHHHHH..T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                       y+C+   Cg++F+  s++ rH r+  H
  OPUNC12G07790.1 1348 YECQepGCGQTFRFVSDFSRHKRKtgH 1374
                       899999****************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.9E-161960IPR003349JmjN domain
PROSITE profilePS5118314.2012061IPR003349JmjN domain
PfamPF023753.5E-142154IPR003349JmjN domain
PROSITE profilePS5118432.594187357IPR003347JmjC domain
SMARTSM005583.3E-43187357IPR003347JmjC domain
SuperFamilySSF511972.0E-22204354No hitNo description
PfamPF023732.5E-34220340IPR003347JmjC domain
SMARTSM003559.712651287IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.90712881317IPR007087Zinc finger, C2H2
SMARTSM003551512881312IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012901312IPR007087Zinc finger, C2H2
SuperFamilySSF576671.58E-1412991355No hitNo description
Gene3DG3DSA:3.30.160.605.4E-1113151342IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.65513181347IPR007087Zinc finger, C2H2
SMARTSM003558.6E-413181342IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013201342IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.3E-1013431371IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.1813481374IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.92613481379IPR007087Zinc finger, C2H2
PROSITE patternPS00028013501374IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1384 aa     Download sequence    Send to blast
MSLQPPAVEP PEWLRTLPVA PEYHPTLAEF ADPIAYILRI EPEASRYGIC KIVPPLPRPP  60
EDDTFRRLQA AFASSNAGDP SPTFPTRLQQ VGLSTKNRRA ASRRVWESGE RYTLEAFRAK  120
AAEFEPPRHA APPKNATHLQ LEALFWAACA SRPFSVEYGN DMPGSGFASP EELPAAANAS  180
AAAAPSDVGE TEWNMRVAPR ARGSLLRAMA RDVAGVTTPM LYVAMLYSWF AWHVEDHELH  240
SLNFLHFGKA KTWYGVPRDA MLAFEETVRV HGYADDLNAI RVAFQTLNEK TTVLSPEVLL  300
SAGVPCCRLV QKAGEFVITF PGAYHSGFSH GFNCGEASNI ATPHWLQVAK EAAIRRASTN  360
CGPMVSHYQL LYELALSLRP REPKNFYSVP RSSRLRDKNK NEGDIMVKEN FVGSVIENNN  420
LLSVLLDKNS CIIVPNTGFF IPSFPVALES EVTVKQRFTA GPCSISQLGA DNMAVDHVAV  480
DKVTEIQDMS GSLYTCETSL VGCSNRKLYE TKYGQRDAAA LCLSTSEIQS RGIDKARSHP  540
VGGILDQGRL PCVQCGILSF ACVAIIQPRE AAVQFIMSKE CISSSAKQGE IGASDDTSNW  600
IGQSHDISPS PDFGSYIVGF ISTTGPASGT DDNVKHAVSL AHVSDRCREL YASNTDGCTS  660
ALGLLASAYD SSDSDDETTE DVSKHSKKND SVNQSTDTQI LETSASCSST FRCQKTNSHS  720
HEEQCEARAT SLMKPVSHNS RPISQSNRDT DIDHFIELGK SGTQCSGYLD LVDDLTTSVL  780
KSSSDTCVSA AKASMDPDVL TMLRYNKDSC RMHVFCLEHA LETWTQLQQI GGANIMLLCH  840
PEYPRAESAA KVIAEELGIK HDWKDITFKE ATEEDVKKIQ LALQDEDAEP TGSDWAVKMG  900
INIYYSAKQS KSPLYSKQIP YNSIIYKAFG QENPDSLTDY GCQKSGSTKK KVAGWWCGKV  960
WMSNQVHPLL AREREEQNSS IVYGKAIFTT ISHGKVQDEA STRCNTSNRT ASKRTSRRKK  1020
GGSAEKSKAK KKKSTASDEA SMHCSGLGMN SGAIHDQPEN SDNYDKHGSG DETEEGTNPQ  1080
KYQQRKLQNV TRKSSSKKRK DERRTDSFHE LYGENNDVDY WLNMGSGDDA TLGNSRQQSP  1140
DPVKVKSGGK LQGKRKSSKY KSNDDLLNEE NKLQKMNKKS SSKKQKNDKI NRQLQEDQNE  1200
DDHMDHLLDV EVADEVTLDN EDKITEDKID DVKVKSRGKS QNVKRKGSKH QASDGLRAGN  1260
KVAKFPCDIE GCDMSFSTQQ DLLLHKRDIC PVKGCKKKFF CHKYLLQHRK VHIDERPLKC  1320
TWKGCKKAFK WPWARTEHMR VHTGVRPYEC QEPGCGQTFR FVSDFSRHKR KTGHSSDKRR  1380
KNST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A2e-69123787353Transcription factor jumonji (Jmj) family protein
6ip4_A2e-69123787353Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
110171032RKKGGSAEKSKAKKKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0652510.0AK065251.1 Oryza sativa Japonica Group cDNA clone:J013002J08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620626.10.0lysine-specific demethylase REF6
TrEMBLA0A0E0MLC50.0A0A0E0MLC5_ORYPU; Uncharacterized protein
STRINGOPUNC12G07790.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67183035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-161relative of early flowering 6