 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OPUNC12G06140.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
FAR1 |
| Protein Properties |
Length: 281aa MW: 31702.7 Da PI: 5.0136 |
| Description |
FAR1 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC12G06140.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | FAR1 | 79 | 8.6e-25 | 94 | 184 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89
fYneYA+ +GF r+ +s++s +++ +++++fvCs+eg +++++ + + +++r+ra+ r gC+a+++v + +++w+v+kle+ HnH+l
OPUNC12G06140.1 94 FYNEYARWLGFPFRVGRSRRSkGMEEVVIMKRFVCSREGAHKKKQAStsgEATSKRERASMREGCNAMMEVVRG-KDHWVVSKLEKAHNHSL 184
9*******************944567789*************99999888888999***************999.9**************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 281 aa
Download sequence Send
to blast |
MEDDERGDGD ELIADYVDCL MSLDTNSRSC QNDTLILEGA PDDVEDDDAA AAAAAEQDVM 60
RDFAPANADA DAEHDPKEPM LGMTFESDEA AKMFYNEYAR WLGFPFRVGR SRRSKGMEEV 120
VIMKRFVCSR EGAHKKKQAS TSGEATSKRE RASMREGCNA MMEVVRGKDH WVVSKLEKAH 180
NHSLGIGTRY GYLSARESCV IESETISTFE TSWMSILEKY DLKKNAWLQA IYNIRQKWEP 240
NLLGLLLGSS NVYIFVFSGR CNVIYHHCMA SCLTCNFHVA R
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK065655 | 0.0 | AK065655.1 Oryza sativa Japonica Group cDNA clone:J013037J06, full insert sequence. |
| GenBank | AK102652 | 0.0 | AK102652.1 Oryza sativa Japonica Group cDNA clone:J033101E02, full insert sequence. |
| GenBank | AK121853 | 0.0 | AK121853.1 Oryza sativa Japonica Group cDNA clone:J033101P07, full insert sequence. |
| GenBank | AL731740 | 0.0 | AL731740.4 Oryza sativa chromosome 12, . BAC OSJNBb0001P19 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
| GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
