PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G05730.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 211aa    MW: 21830.2 Da    PI: 4.7506
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G05730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.91.5e-06545639
         zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                     C+ +e+ e+   C  ++  lC+ C  + H+        H+v
  OPUNC12G05730.1  5 CDACEQAEAAVLCCADEAALCRRCDAAVHSAnrlagkhHRV 45
                     *****************************667899996655 PP
2zf-B_box26.81.1e-0867106437
         zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                      ++C+ ++ek   +fC +++ llC++C ++ H        H
  OPUNC12G05730.1  67 PTCDICQEKTGYFFCLEDRALLCRSCDVAVHTAttpaaaH 106
                      79***************************99555666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.741147IPR000315B-box-type zinc finger
CDDcd000211.35E-5545No hitNo description
SMARTSM003362.3E-6547IPR000315B-box-type zinc finger
Gene3DG3DSA:3.30.40.102.4E-45999IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS501199.264111IPR000315B-box-type zinc finger
SMARTSM003361.3E-1264111IPR000315B-box-type zinc finger
PfamPF006431.2E-667106IPR000315B-box-type zinc finger
CDDcd000211.83E-769111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MKIGCDACEQ AEAAVLCCAD EAALCRRCDA AVHSANRLAG KHHRVALLLP SAAAAPAGDA  60
DAHDHHPTCD ICQEKTGYFF CLEDRALLCR SCDVAVHTAT TPAAAHRRFL ITGVRIGSSI  120
EAAADIIVSP TSSSIAPAGS ASSNHAVAGA ACNDGRSPAP VRFSGGDGGI ELEQQWPWSD  180
VFADDEDDVG TAMEQCYNPG ISEPHSSSLT G
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0678200.0AK067820.1 Oryza sativa Japonica Group cDNA clone:J013117D12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618519.14e-99B-box zinc finger protein 23
SwissprotQ9SYM21e-42BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A0E0MKN71e-150A0A0E0MKN7_ORYPU; Uncharacterized protein
STRINGOPUNC12G05730.11e-151(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121512528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-34light-regulated zinc finger protein 1