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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
OPUNC12G05660.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 268aa MW: 29954.2 Da PI: 9.5082 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC12G05660.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 96.5 | 1.2e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++ rqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
OPUNC12G05660.1 9 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 59
79***********************************************95 PP
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| 2 | K-box | 99.6 | 4.4e-33 | 86 | 176 | 10 | 100 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
e + ++++qqe+akL+ +i++Lq++++hl+G+++++LslkeL+qLe++Lek++ kiR++Knell ++i+++ k+e elq++n++Lr+k++e
OPUNC12G05660.1 86 EVNAQQYYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGIAKIRARKNELLASEINYMAKREIELQNDNMDLRTKIAE 176
567789**********************************************************************************986 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 33.557 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 3.4E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 5.47E-41 | 2 | 75 | No hit | No description |
| SuperFamily | SSF55455 | 5.36E-32 | 2 | 76 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 6.5E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.8E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 6.5E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 6.5E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 9.3E-25 | 87 | 174 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 14.968 | 90 | 180 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0048283 | Biological Process | indeterminate inflorescence morphogenesis |
| GO:0048316 | Biological Process | seed development |
| GO:0048481 | Biological Process | plant ovule development |
| GO:0080155 | Biological Process | regulation of double fertilization forming a zygote and endosperm |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 268 aa
Download sequence Send
to blast |
MGRGRIEIKR IENTTSRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNN 60
NNVKATIDRY KKAHACGSTS GAPLIEVNAQ QYYQQESAKL RHQIQMLQNT NKHLVGDNVS 120
NLSLKELKQL ESRLEKGIAK IRARKNELLA SEINYMAKRE IELQNDNMDL RTKIAEEEQQ 180
LQQVTVARSA AMELQAAAAA QQQNPFAAAA AQLDMKCFFP VNLFEAAAQV QAVAAAQRQQ 240
IIPTELNLGY HHHLALPGAA ADAPPPHF
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1tqe_P | 1e-18 | 1 | 61 | 1 | 61 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 1e-18 | 1 | 61 | 1 | 61 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 1e-18 | 1 | 61 | 1 | 61 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 1e-18 | 1 | 61 | 1 | 61 | Myocyte-specific enhancer factor 2B |
| 5f28_A | 1e-18 | 1 | 61 | 1 | 61 | MEF2C |
| 5f28_B | 1e-18 | 1 | 61 | 1 | 61 | MEF2C |
| 5f28_C | 1e-18 | 1 | 61 | 1 | 61 | MEF2C |
| 5f28_D | 1e-18 | 1 | 61 | 1 | 61 | MEF2C |
| 6c9l_A | 1e-18 | 1 | 61 | 1 | 61 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 1e-18 | 1 | 61 | 1 | 61 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 1e-18 | 1 | 61 | 1 | 61 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 1e-18 | 1 | 61 | 1 | 61 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 1e-18 | 1 | 61 | 1 | 61 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 1e-18 | 1 | 61 | 1 | 61 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF151693 | 0.0 | AF151693.1 Oryza sativa transcription factor (MADS13) mRNA, complete cds. |
| Publications
? help Back to Top |
- Gindullis F,Rose A,Patel S,Meier I
Four signature motifs define the first class of structurally related large coiled-coil proteins in plants.
BMC Genomics, 2002. 3: p. 9
[PMID:11972898] - Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Yamaki S,Satoh H,Nagato Y
Gypsy embryo specifies ovule curvature by regulating ovule/integument development in rice.
Planta, 2005. 222(3): p. 408-17
[PMID:16001259] - Dreni L, et al.
The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice.
Plant J., 2007. 52(4): p. 690-9
[PMID:17877710] - Yamaki S,Nagato Y,Kurata N,Nonomura K
Ovule is a lateral organ finally differentiated from the terminating floral meristem in rice.
Dev. Biol., 2011. 351(1): p. 208-16
[PMID:21146515] - Li H,Liang W,Yin C,Zhu L,Zhang D
Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy.
Plant Physiol., 2011. 156(1): p. 263-74
[PMID:21444646] - Li H, et al.
Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
Plant Cell, 2011. 23(7): p. 2536-52
[PMID:21784949]
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