PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G04340.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 480aa    MW: 51677.1 Da    PI: 5.7125
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G04340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.85.1e-07237258223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       C++Cgk F+r  nL+ H+r H
  OPUNC12G04340.1 237 FCGICGKGFKRDANLRMHMRGH 258
                      6*******************98 PP
2zf-C2H210.70.0017324347123
                      EEETTTT.EEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                      ++C+ Cg k+Fs   +Lk+H + +
  OPUNC12G04340.1 324 HVCGRCGaKRFSVMADLKTHEKHC 347
                      79******************9876 PP
3zf-C2H210.90.0014356370620
                      TTEEESSHHHHHHHH CS
          zf-C2H2   6 CgksFsrksnLkrHi 20 
                      Cg+sFsrk+ L  H 
  OPUNC12G04340.1 356 CGTSFSRKDKLFAHV 370
                      **************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.27E-6235258No hitNo description
PROSITE profilePS5015711.759236263IPR007087Zinc finger, C2H2
SMARTSM003550.0091236258IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-5237262IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280238258IPR007087Zinc finger, C2H2
SMARTSM0035566286319IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.27E-6319345No hitNo description
SMARTSM0035547324346IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010044Biological Processresponse to aluminum ion
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MNRDQMNTMR DQAANLSAMN PLFYPFMAED ALLGMGMPAA APPPPPPPQL LPSASIQHMD  60
WSPDTMLDNL TFIEEKIRQV KDVIRSMASR RASSSSAAAA ATPEQQLVNA DLTCLIVQLI  120
STAGSLLPSL KNSSFLSRTT PPPTAGAAGA AQAVSLAAGE SSSSVRNEEM SKEEEMGSPD  180
YDELFNGWTN GDVLAGDEHD AKVDGENPAP AAAVAAEEKY EVLQLEEDEI LAPHTHFCGI  240
CGKGFKRDAN LRMHMRGHGD EYKSAAALAK PPPVAGGEEE QPERRYSCPY AGCKRNRMHA  300
SFQPLKTILC VKNHYKRSHC EKRHVCGRCG AKRFSVMADL KTHEKHCGRD RWLCSCGTSF  360
SRKDKLFAHV ALFQGHAPAL PPPPPPPPPP PASSSTATAT SGRRRHKQEE PEFTWGGDGD  420
EFLDVKGIAG VGVGSGGDEF FSAGSFGAMD FGFGQLDASL AMLLPSEQFA GDHDEENGEK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance. {ECO:0000269|PubMed:19880795}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620753.10.0zinc finger protein STAR3
SwissprotQ2QX400.0ART1_ORYSJ; Zinc finger protein STAR3
TrEMBLA0A0E0MK630.0A0A0E0MK63_ORYPU; Uncharacterized protein
STRINGOPUNC12G04340.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-104C2H2 family protein
Publications ? help Back to Top
  1. Xia J,Yamaji N,Kasai T,Ma JF
    Plasma membrane-localized transporter for aluminum in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2010. 107(43): p. 18381-5
    [PMID:20937890]
  2. Tsutsui T,Yamaji N,Feng Ma J
    Identification of a cis-acting element of ART1, a C2H2-type zinc-finger transcription factor for aluminum tolerance in rice.
    Plant Physiol., 2011. 156(2): p. 925-31
    [PMID:21502187]
  3. Famoso AN, et al.
    Genetic architecture of aluminum tolerance in rice (Oryza sativa) determined through genome-wide association analysis and QTL mapping.
    PLoS Genet., 2011. 7(8): p. e1002221
    [PMID:21829395]
  4. Yokosho K,Yamaji N,Ma JF
    An Al-inducible MATE gene is involved in external detoxification of Al in rice.
    Plant J., 2011. 68(6): p. 1061-9
    [PMID:21880027]
  5. Huang CF,Yamaji N,Chen Z,Ma JF
    A tonoplast-localized half-size ABC transporter is required for internal detoxification of aluminum in rice.
    Plant J., 2012. 69(5): p. 857-67
    [PMID:22035218]
  6. Chen ZC,Yamaji N,Motoyama R,Nagamura Y,Ma JF
    Up-regulation of a magnesium transporter gene OsMGT1 is required for conferring aluminum tolerance in rice.
    Plant Physiol., 2012. 159(4): p. 1624-33
    [PMID:22732245]
  7. Tsutsui T, et al.
    Comparative genome-wide transcriptional analysis of Al-responsive genes reveals novel Al tolerance mechanisms in rice.
    PLoS ONE, 2012. 7(10): p. e48197
    [PMID:23110212]
  8. Chen ZC, et al.
    Adaptation to acidic soil is achieved by increased numbers of cis-acting elements regulating ALMT1 expression in Holcus lanatus.
    Plant J., 2013. 76(1): p. 10-23
    [PMID:23773148]
  9. Xia J,Yamaji N,Ma JF
    A plasma membrane-localized small peptide is involved in rice aluminum tolerance.
    Plant J., 2013. 76(2): p. 345-55
    [PMID:23888867]
  10. Yokosho K,Yamaji N,Fujii-Kashino M,Ma JF
    Functional Analysis of a MATE Gene OsFRDL2 Revealed its Involvement in Al-Induced Secretion of Citrate, but a Lower Contribution to Al Tolerance in Rice.
    Plant Cell Physiol., 2016. 57(5): p. 976-85
    [PMID:26872836]
  11. Che J,Yamaji N,Shen RF,Ma JF
    An Al-inducible expansin gene, OsEXPA10 is involved in root cell elongation of rice.
    Plant J., 2016. 88(1): p. 132-142
    [PMID:27302336]
  12. Yokosho K,Yamaji N,Fujii-Kashino M,Ma JF
    Retrotransposon-Mediated Aluminum Tolerance through Enhanced Expression of the Citrate Transporter OsFRDL4.
    Plant Physiol., 2016. 172(4): p. 2327-2336
    [PMID:27744299]