PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G03540.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 607aa    MW: 63149.9 Da    PI: 6.3316
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G03540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-093323691954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  OPUNC12G03540.1 332 FEHflHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVR 369
                      554459******************************88 PP
2BELL116.11.8e-37185256172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      erqelq+kk+kLl++l+eV++rY+qy+ q+q+v+++Fea+ag gsa+ YtslAl++iSr+FrcL+daia q+
  OPUNC12G03540.1 185 ERQELQMKKSKLLNMLDEVEQRYRQYHRQMQAVAAAFEAAAGAGSARTYTSLALRTISRQFRCLRDAIAAQV 256
                      79*******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.8E-57109254IPR006563POX domain
PfamPF075263.8E-47114253IPR006563POX domain
PROSITE profilePS5007111.904310373IPR001356Homeobox domain
CDDcd000865.24E-13313374No hitNo description
SMARTSM003897.8E-10313377IPR001356Homeobox domain
SuperFamilySSF466893.38E-17314380IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-28316379IPR009057Homeodomain-like
PfamPF059204.0E-18330369IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MAAYFTGGGA GTDVVQAAGT DGLQTLYLMN PSYVGFTDAA TAPGGASNVM FLNSTVSTLT  60
PARFGHHHQQ QTPAAQHFVG IPLQPAPHSG YNLWGPDTTG AATGNDVSPP RQQVVMRSRY  120
LKAAQELLDE AVSVSKGATA VKKKEDSEGG VSGGGGGGGG GGGGGVDDGG DSKSGGAAAE  180
MSTAERQELQ MKKSKLLNML DEVEQRYRQY HRQMQAVAAA FEAAAGAGSA RTYTSLALRT  240
ISRQFRCLRD AIAAQVRAAS RGLGEDCGDE DGSGGRTTVG SRLRFIDSQL RQQRAMQQLG  300
MVHAAGGGGG GGWRPQRGLP ERAVSVLRAW LFEHFLHPYP KDSDKVMLAK QTGLTRSQVS  360
NWFINARVRL WKPMVEEMYA EETKAKEEEE HDAAATAVTG DGSNDSVAEQ PPDKPESAGI  420
GMSSSPAATT SRSAGVHAGV QQTQASFYGG GGVGGGDAFQ CRIKKARTTA DEPTAAFHVS  480
DEAAVSHREL LMKFMEAGGE GARGHPGVID DDDDDVAGGN GGYSLFTPAP YVHQFGSEHF  540
AFAGHGGRGV SLTLGLPHGA DQTPASFLMG ASTGGSDGGA PVTTAGYDMN MQSTKSLAAQ  600
LMRDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A1e-17319377563Homeobox protein Meis2
4xrm_B1e-17319377563Homeobox protein Meis2
5bng_A1e-17319377159Homeobox protein Meis2
5bng_B1e-17319377159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1208440.0AK120844.1 Oryza sativa Japonica Group cDNA clone:J023022M14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619926.20.0LOW QUALITY PROTEIN: BEL1-like homeodomain protein 1
TrEMBLA0A0E0MJW90.0A0A0E0MJW9_ORYPU; Uncharacterized protein
STRINGOPUNC12G03540.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48163758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-84BEL1-like homeodomain 1