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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OPUNC12G03240.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
NAC |
| Protein Properties |
Length: 303aa MW: 32874.4 Da PI: 6.8536 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC12G03240.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 129.1 | 3.4e-40 | 17 | 150 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk....kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
+GfrF Pt+eel+ +yL+++++g++++ ++vi+ vd+y ++P++L + + + ++++w+fF++r+ ++ +g r+ r+t sgyWkatg+
OPUNC12G03240.1 17 AGFRFYPTEEELIGFYLRHRLAGTRIDDvTRVIPVVDVYGYHPSQLASmageA-SVgDKEQWFFFCPRADRELHGGRPARTTPSGYWKATGSPS 109
7************************6551667**************8434532.2235669********************************* PP
NAM 91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
v+s+ ++++g+k+t+vfy+grap+g+kt+W m+ey++
OPUNC12G03240.1 110 FVFSSssaASRVIGVKRTMVFYQGRAPTGTKTRWKMNEYKA 150
***987777778***************************85 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 303 aa
Download sequence Send
to blast |
MVMSGGGERR TDQLATAGFR FYPTEEELIG FYLRHRLAGT RIDDVTRVIP VVDVYGYHPS 60
QLASMAGEAS VGDKEQWFFF CPRADRELHG GRPARTTPSG YWKATGSPSF VFSSSSAASR 120
VIGVKRTMVF YQGRAPTGTK TRWKMNEYKA VDAADDDDHN AAAAVQLPPM APPPSSSSTS 180
ACVRLRNELS VCRVYVSTGT LRSFDRRPLD APPVSHHDHH NQPHQLQQQR LPSSSPATTN 240
ANLALAGGYE CSHDSSGASS EDAAIDWNSL ITATANTTTT AGDFSFNDID FSSGAVGPWP 300
WAP
|
| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 4e-28 | 7 | 152 | 5 | 144 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 4e-28 | 7 | 152 | 5 | 144 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 4e-28 | 7 | 152 | 5 | 144 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 4e-28 | 7 | 152 | 5 | 144 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 5e-28 | 7 | 152 | 8 | 147 | NAC domain-containing protein 19 |
| 3swm_B | 5e-28 | 7 | 152 | 8 | 147 | NAC domain-containing protein 19 |
| 3swm_C | 5e-28 | 7 | 152 | 8 | 147 | NAC domain-containing protein 19 |
| 3swm_D | 5e-28 | 7 | 152 | 8 | 147 | NAC domain-containing protein 19 |
| 3swp_A | 5e-28 | 7 | 152 | 8 | 147 | NAC domain-containing protein 19 |
| 3swp_B | 5e-28 | 7 | 152 | 8 | 147 | NAC domain-containing protein 19 |
| 3swp_C | 5e-28 | 7 | 152 | 8 | 147 | NAC domain-containing protein 19 |
| 3swp_D | 5e-28 | 7 | 152 | 8 | 147 | NAC domain-containing protein 19 |
| 4dul_A | 4e-28 | 7 | 152 | 5 | 144 | NAC domain-containing protein 19 |
| 4dul_B | 4e-28 | 7 | 152 | 5 | 144 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AL928758 | 0.0 | AL928758.3 Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
| GenBank | AL954632 | 0.0 | AL954632.3 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
| GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
| GenBank | KP033190 | 0.0 | KP033190.1 Oryza sativa cultivar Dong Jin NAC-related protein 134 mRNA, complete cds. |
