 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OPUNC12G01000.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
WRKY |
| Protein Properties |
Length: 318aa MW: 34173.8 Da PI: 6.6606 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC12G01000.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 69.6 | 4.6e-22 | 122 | 183 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE..EEEEEES--SS- CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv..veitYegeHnhe 59
Dgy+WrKYGqK+++g+ +prsYYrCt + gC +kk v+r+ + + ++ Y +eH+++
OPUNC12G01000.1 122 DGYQWRKYGQKQIEGAMYPRSYYRCTNStnqGCLAKKTVQRNGGGGGAarYTVAYISEHTCK 183
9************************9888889**********976654116899*****997 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 318 aa
Download sequence Send
to blast |
MEAYNCMMVG RERELVAELR HLLFPSSSPI PTTPASHASS TLAGDQCLPP AGLSGGGRRR 60
GRKRARRDND NVKLLQADDD QEAVVADHGD ANAKCLPNFT KTSKRKQQTT TSTMVTTVPD 120
FDGYQWRKYG QKQIEGAMYP RSYYRCTNST NQGCLAKKTV QRNGGGGGAA RYTVAYISEH 180
TCKSMESSLA PVILDTTVRT NSHHHPPAAT AAAAQSPATS SSSDMIMTSS TTSSSGETSW 240
SGQHGAYIAA DEDCWDTNKY TCGSDGGNSC AEEMELLSGP IRSPVHIAAD GNWMDDLLLA 300
CDGLIDTSNA NISHIFSF
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP014968 | 5e-82 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
| GenBank | BX000500 | 5e-82 | BX000500.4 Oryza sativa chromosome 12, . BAC OSJNBb0027B07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
| GenBank | CP012620 | 5e-82 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
