PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G01000.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 318aa    MW: 34173.8 Da    PI: 6.6606
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G01000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.64.6e-22122183359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE..EEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv..veitYegeHnhe 59 
                      Dgy+WrKYGqK+++g+ +prsYYrCt +   gC +kk v+r+   + +   ++ Y +eH+++
  OPUNC12G01000.1 122 DGYQWRKYGQKQIEGAMYPRSYYRCTNStnqGCLAKKTVQRNGGGGGAarYTVAYISEHTCK 183
                      9************************9888889**********976654116899*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-23105184IPR003657WRKY domain
SuperFamilySSF1182902.09E-21113183IPR003657WRKY domain
SMARTSM007745.6E-30120184IPR003657WRKY domain
PROSITE profilePS5081119.52122163IPR003657WRKY domain
PfamPF031066.1E-22122183IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEAYNCMMVG RERELVAELR HLLFPSSSPI PTTPASHASS TLAGDQCLPP AGLSGGGRRR  60
GRKRARRDND NVKLLQADDD QEAVVADHGD ANAKCLPNFT KTSKRKQQTT TSTMVTTVPD  120
FDGYQWRKYG QKQIEGAMYP RSYYRCTNST NQGCLAKKTV QRNGGGGGAA RYTVAYISEH  180
TCKSMESSLA PVILDTTVRT NSHHHPPAAT AAAAQSPATS SSSDMIMTSS TTSSSGETSW  240
SGQHGAYIAA DEDCWDTNKY TCGSDGGNSC AEEMELLSGP IRSPVHIAAD GNWMDDLLLA  300
CDGLIDTSNA NISHIFSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-131221831069OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15866RRGRKRARR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149685e-82AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0005005e-82BX000500.4 Oryza sativa chromosome 12, . BAC OSJNBb0027B07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126205e-82CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616434.11e-137probable WRKY transcription factor 33
TrEMBLA0A0E0MIY10.0A0A0E0MIY1_ORYPU; Uncharacterized protein
STRINGOPUNC12G01000.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57603058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.11e-15WRKY DNA-binding protein 43