PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G00430.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 390aa    MW: 43115.5 Da    PI: 8.9087
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G00430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601352.9e-422583571100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +Ca+Ck+lrr+C+++Cv+apyfpae++++fa+vh++FGasnv+k+l ++p+ +r da+sslvyeA+ar+rdPvyG+v+ i+ lq+q++ql+ +l
  OPUNC12G00430.1 258 PCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRADAVSSLVYEANARMRDPVYGCVASISFLQHQVSQLQMQL 351
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      al+++e
  OPUNC12G00430.1 352 ALANAE 357
                      *99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.407257358IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-42258355IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MATTAGAGDE HLLSLLASAL SHRRFGEQEL RLLDAALSAG PDVSALLHTR SSARCLLREA  60
AAQAFSVPDL GTRLSIADFF ARAFALAGDV ESCLAMRYEA LLLREAKYPD DLHLQVSNEE  120
WLTFAKDCLD NGFYTIASKA FANALVHIDP SCPRYLDPTN SILKKDKING ISGLQNLAKS  180
LSALRSVQTQ SAEYMKRKAS EVNDKCNLHL QKAKLPGSSM FRLGIKTRNI RKLHCSRQRN  240
LKESRGRKAM AGSGSGTPCA SCKLLRRRCT SECVFAPYFP AEEAQRFAMV HRVFGASNVS  300
KMLLDVPPPQ RADAVSSLVY EANARMRDPV YGCVASISFL QHQVSQLQMQ LALANAETAA  360
LQLQLQQDQD HHHQQCMLQE AFLKKESMWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-432533576110LOB family transfactor Ramosa2.1
5ly0_B3e-432533576110LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2417611e-166AK241761.1 Oryza sativa Japonica Group cDNA, clone: J065205C18, full insert sequence.
GenBankAP0149671e-166AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankAP0149681e-166AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0004941e-166BX000494.2 Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankBX0004971e-166BX000497.1 Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617626.11e-140uncharacterized protein LOC4349559
TrEMBLA0A0E0MIP50.0A0A0E0MIP5_ORYPU; Uncharacterized protein
STRINGOPUNC12G00430.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP675133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.15e-48LBD family protein