PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G20080.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 262aa    MW: 28979.9 Da    PI: 6.4182
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G20080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00016385123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C + F++   L  H+++H
  OPUNC11G20080.1 63 YTCSFCQREFRSAQALGGHMNVH 85
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.82E-66089No hitNo description
SMARTSM003550.00316385IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-56386IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2616390IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEEQRGEEEW HMWGSAGRSS SRRIIRQSAA AAYSGSEPSW EEQAFARDAA ANLGGCVWPP  60
RFYTCSFCQR EFRSAQALGG HMNVHRRDRA RLRQSSSCSP SHQEDEEETE APQDQQGPYC  120
CYTSFSKPST TSTNNTTSND IGREETIKKR VLVPVRQQQV ELVADQDDDE LEAEPAGRRY  180
KRRRLHLVDQ LPSSCEGGGH HQVANKQVLI ITPSTAATSP SSIITSASAL VVGDQQHQQA  240
GSVLDLELRL GTSTPPKAVM HA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-125885229superman protein
2l1o_A2e-125885229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180184KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1330085e-97AC133008.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence.
GenBankAP0149675e-97AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615827.11e-102probable transcriptional regulator RABBIT EARS
TrEMBLA0A0E0MIF30.0A0A0E0MIF3_ORYPU; Uncharacterized protein
STRINGOPUNC11G20080.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP174901111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.18e-26zinc-finger protein 10