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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC11G20020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 584aa MW: 66031.4 Da PI: 6.2777 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 294.9 | 2.1e-90 | 207 | 576 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 + lL+ cA+a+++++++ a +lL++++++a +gd+mqR+a+yf+ +L+arla+s+++ly+ + ++ s +e l+++kl+ ++ + k++ OPUNC11G20020.1 207 RMLLILCAQAMATDNQQSAGELLKKIQQHALATGDAMQRVAHYFAMGLEARLAGSGKHLYQ--NRWRMS---LVEYLKVYKLYMAACCFKKVAL 295 679*********************************************************5..445554...99******************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 + a +I++av+g++r+Hi+D+++ Gl+Wp L++ L sR++gpp++RiT v+ p++g ++++e+ g+ L++ A+e++vpf+f++++a ++e OPUNC11G20020.1 296 IFAAMTIMQAVQGKKRLHIVDYGARCGLHWPDLFRRLGSREDGPPEVRITIVDIPQPGfrPSQSIEAAGHCLSSCANEFRVPFRFHAVAAAKWE 389 *********************************************************9*9***************************9999*** PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 ++ +e+L+++ +E+l+Vn ++ l+desv + +rd L+ + +++P+v++ + ++ ++sFl rf al yysalfd+l+a+ pres OPUNC11G20020.1 390 TVGVEDLHIELDEVLVVNDLFSFSALMDESVFCDGpnPRDVALRNISKMQPDVFIQGITNENY-GASFLSRFRGALLYYSALFDMLDATTPRES 482 ******************************98776669************************9.789*************************** PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 e r +E+ +lg+ + n++acega+ ++r e++++W++r ++aG+++++l+ +++++++ +++++ + + +ee+ +++++gW++r L++ SaW OPUNC11G20020.1 483 ELRLALEQNVLGPYALNAIACEGADLVQRPEKYRQWQARNHRAGMQQLTLRPDIVDTIRDEVNRYHHKDFLLEEDGQWMLQGWMGRILFAHSAW 576 ******************************************************************888************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 52.243 | 180 | 557 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.3E-88 | 207 | 576 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 584 aa Download sequence Send to blast |
MANPEDFFWE ALLKENQAPS PPPVFFDLPP TPIANSDDNQ LLSYISRMLM EDEMGSSDAT 60 TNLQCGSTEE AKDLLPGSEV VRAFLKGMEE ASKFLPRNNR FGMLETVDQV SRQISHGHCR 120 GRKKRNHDRD EQQLEEELGR SSKLAALRIA GPEEAGAREL LDELMLHAHE TCIKDMEKLR 180 IDMDNEAAKN INKKDKKGSS RKAVDLRMLL ILCAQAMATD NQQSAGELLK KIQQHALATG 240 DAMQRVAHYF AMGLEARLAG SGKHLYQNRW RMSLVEYLKV YKLYMAACCF KKVALIFAAM 300 TIMQAVQGKK RLHIVDYGAR CGLHWPDLFR RLGSREDGPP EVRITIVDIP QPGFRPSQSI 360 EAAGHCLSSC ANEFRVPFRF HAVAAAKWET VGVEDLHIEL DEVLVVNDLF SFSALMDESV 420 FCDGPNPRDV ALRNISKMQP DVFIQGITNE NYGASFLSRF RGALLYYSAL FDMLDATTPR 480 ESELRLALEQ NVLGPYALNA IACEGADLVQ RPEKYRQWQA RNHRAGMQQL TLRPDIVDTI 540 RDEVNRYHHK DFLLEEDGQW MLQGWMGRIL FAHSAWVPQD TSSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-34 | 213 | 580 | 26 | 382 | Protein SCARECROW |
5b3h_A | 1e-34 | 213 | 580 | 25 | 381 | Protein SCARECROW |
5b3h_D | 1e-34 | 213 | 580 | 25 | 381 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012619 | 0.0 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616386.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | A0A0E0MIE5 | 0.0 | A0A0E0MIE5_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC11G20020.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-123 | SCARECROW-like 14 |