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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC11G20010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 1883aa MW: 211821 Da PI: 5.5844 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 349.9 | 4.2e-107 | 303 | 681 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL++cA+av++gd + a++lL+++++++sp+gd++qRla +f+e+L+arla+++s++y++l +++ts +++ l+a+klf ++ i k+ OPUNC11G20010.1 303 LRTLLIHCAQAVATGDRRSATELLKQVKQNSSPRGDATQRLACCFAEGLEARLAGTGSQVYQSLVAKRTS---TVDFLKAYKLFTAACCIKKVN 393 6789************************************************************999999...8******************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 + N++I +av+g++++Hi+D+++ +G+QWp L++ L++R++gpp++RiTg++ p++g ++++eetg+rL++ A+++gvpf+f++ +a ++ OPUNC11G20010.1 394 VIFSNKTICDAVAGKRKLHIVDYGLCYGFQWPGLFKFLSEREGGPPEVRITGIDLPQPGfrPAQQIEETGRRLSNCARQFGVPFKFQA-IAAKW 486 **********************************************************9*****************************.799** PP GRAS 187 edleleeLrvkp.....gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 e+++ e+L+++ +E+l+Vn+ + l l desv ++s +rd vL+ +++++P v++ + + ++++ F++rf eal +ysa fd+l+a OPUNC11G20010.1 487 ETVRREDLHLDVdseeeEEVLVVNCLHGLNALQDESVVVDSpsPRDMVLNNIRDMRPVVFIQCVVNGAYGAPFFVTRFREALFHYSAQFDMLDA 580 ********8877678889******************98888779************************************************** PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 ++pr+++er +Er llgr++ nv+acega+r+ r et+++W+ r ++aG++++pl+ ++++ +++ +++ + + + ++ ++++l++gWk+r L OPUNC11G20010.1 581 TIPRDNDERLLIERDLLGRWALNVIACEGADRVDRPETYKQWQVRNHRAGLTQLPLEPQVVELVRHKVKNLYHKDFVIDVDHNWLLQGWKGRIL 674 ************************************************************************888******************* PP GRAS 368 vsvSaWr 374 +++SaW+ OPUNC11G20010.1 675 YAMSAWE 681 ******5 PP | |||||||
2 | GRAS | 342.3 | 8.1e-105 | 935 | 1301 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 +lL++cA+av++gd + a++lL+++++++sp+gd++qRla +f+e+L+arla+++s++y++l +++ts +++ l+a+klf ++ + k+ OPUNC11G20010.1 935 HTLLIHCAQAVATGDRRSATQLLNQIKQHSSPRGDATQRLACCFAEGLEARLAGTGSQVYQSLMAKRTS---TVDFLKAYKLFTAACCVNKV 1023 679************************************************************999998...8******************* PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183 + N++I +av+g +++Hi+D+++++G+QWpaL+ L +R++gpp++R+Tg++ p++g ++++eetg+rL++ A+++gvpf+f++ +a OPUNC11G20010.1 1024 NIIFSNKTIHNAVAGRHKLHIVDYGLGYGFQWPALFLLLGAREGGPPEVRMTGIDVPQPGfrPADQIEETGRRLSNWARQFGVPFKFQA-IA 1114 ***********************************************************9*****************************.79 PP GRAS 184 krledleleeL..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 ++e+++ e+L +v+p+E+l+Vn+ + l +l es+rd vL+ +++++P+v+v + + ++++ F++rf eal +ysa fd+l+a OPUNC11G20010.1 1115 AKWETVRREDLglDVDPEEVLVVNCLHGLNNLQ-----EESPRDMVLNNIRDMRPDVFVQCVVNGAYGAPFFVTRFREALFHYSAQFDMLDA 1201 9********98556778************9997.....6778999*********************************************** PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365 ++pr+++er +Er llgr++ nv+acega+r+ r et+++W+ r ++aG++++pl+ ++++ +++ ++ + + + ++ ++++l++gWk+r OPUNC11G20010.1 1202 TIPRDNDERLLIERDLLGRWALNVIACEGADRVDRPETYKQWQVRNHRAGLTQLPLEPQVVELVRHKVKSLYHKDFVIDVDHNWLLQGWKGR 1293 ************************************************************************888***************** PP GRAS 366 pLvsvSaW 373 L+++SaW OPUNC11G20010.1 1294 ILYAMSAW 1301 ******** PP | |||||||
3 | GRAS | 349.8 | 4.3e-107 | 1507 | 1878 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 +lLl+cA+av+++d + a++lL ++++++sp gd+ qRla++f+++L+arla+++s++y++l +++ts +++ l+a++l+ e++ + k+ OPUNC11G20010.1 1507 HNLLLHCAQAVATDDRRSAHELLRQIKQHSSPWGDAGQRLAHCFAQGLEARLAGTGSQVYRSLMSQRTS---VVDFLKAYRLYMEACCCKKV 1595 689************************************************************999999...******************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183 +++ N++I++av+g +r+Hi+D+++s+G+QWp Ll++La+R++gpp++RiTg++ p++g + +eetg+rL+k+A+elgvpf+f+ ++a OPUNC11G20010.1 1596 AFVFSNKTIYDAVAGRSRLHIVDYGLSYGFQWPGLLRELAARRGGPPEVRITGIDLPQPGfrPDQHIEETGRRLSKYADELGVPFKFQGIAA 1687 ***********************************************************9*99***************************99 PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesv.sleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 +r e+++leeL+ + +E+++V + + +++des+ + +s+rdevL+ +++++P+v+++ +a ++++ Fl+rf eal+yy+a fd l+a+ OPUNC11G20010.1 1688 TRKESVRLEELEGEADEVVVVISLCHFRSVMDESLlDRRSPRDEVLSNIRRMRPDVFIHGIMNAAYGATYFLTRFREALYYYAAQFDLLDAT 1779 9******************************999725556**************************************************** PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366 ++r+s+er+ vEr ++gr++ nv+acegaer+er e +++W++r ++aG++++pl+ +++ + +r + + + v+e++ +l+ Wk+r OPUNC11G20010.1 1780 VARDSHERMLVERDIFGRAALNVIACEGAERVERPEMYKQWQARNQRAGLRQLPLNPQVVRLVLDKVRDKYHKDFVVDEDQRWLLHRWKGRV 1871 *****************************************************************999999888****************** PP GRAS 367 LvsvSaW 373 L+++S W OPUNC11G20010.1 1872 LYALSTW 1878 ******* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 60.429 | 277 | 661 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-104 | 303 | 681 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 60.185 | 908 | 1282 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.8E-102 | 935 | 1301 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 61.219 | 1480 | 1859 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-104 | 1507 | 1878 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 1883 aa Download sequence Send to blast |
MVWDGSIGLK ESMAAAAAPQ LEEPVVVEVE PFSPSLFLDL PPTPHDDDPN DDDLLLPFIS 60 RMLMEDDIDD KFFYQFPDHP ALLNAQQPYA QILEAPSDDT ITNTTNSSDD SASAATTTWP 120 YDPIELSQLL QSPPHPVFDT LDGGATKSAP DEDADLFAGA DNMEMLNMAF LKGREEANKF 180 LPTNNTLFAA FDSDARLKAE PVLDDPTLMF GGSGGRGRKN RHCEEDDLEA ETGRSSKLMV 240 PPQEDTAAAR EMLDEIMFNG YEVIMKGMDE LRVAMDSEAE KKARNGGGAG RRADRAKAAV 300 VDLRTLLIHC AQAVATGDRR SATELLKQVK QNSSPRGDAT QRLACCFAEG LEARLAGTGS 360 QVYQSLVAKR TSTVDFLKAY KLFTAACCIK KVNVIFSNKT ICDAVAGKRK LHIVDYGLCY 420 GFQWPGLFKF LSEREGGPPE VRITGIDLPQ PGFRPAQQIE ETGRRLSNCA RQFGVPFKFQ 480 AIAAKWETVR REDLHLDVDS EEEEEVLVVN CLHGLNALQD ESVVVDSPSP RDMVLNNIRD 540 MRPVVFIQCV VNGAYGAPFF VTRFREALFH YSAQFDMLDA TIPRDNDERL LIERDLLGRW 600 ALNVIACEGA DRVDRPETYK QWQVRNHRAG LTQLPLEPQV VELVRHKVKN LYHKDFVIDV 660 DHNWLLQGWK GRILYAMSAW EAMAASPKLE VEPFSPSLFL DLPPTPTPHD DDHNNDDLLL 720 PFISRMLMED DIHDKFFYHF PDHPALLHTQ QSYAQILHAP SSSSDDTTNN NTSNSSVPDH 780 DGYGGATQSA PDLKQLFARA HNMEMLNMAF LKGREEAIKF LPTNKTLFAG FDGAARLKEE 840 PTFMFIRSGG RGRKNKHGEE DDLDAETSRS SKLMVPEHED TAEAGKIFDE IILNGYQMII 900 KGIDDLRVSM GSEADEKARN GLRASRAKTA VVDLHTLLIH CAQAVATGDR RSATQLLNQI 960 KQHSSPRGDA TQRLACCFAE GLEARLAGTG SQVYQSLMAK RTSTVDFLKA YKLFTAACCV 1020 NKVNIIFSNK TIHNAVAGRH KLHIVDYGLG YGFQWPALFL LLGAREGGPP EVRMTGIDVP 1080 QPGFRPADQI EETGRRLSNW ARQFGVPFKF QAIAAKWETV RREDLGLDVD PEEVLVVNCL 1140 HGLNNLQEES PRDMVLNNIR DMRPDVFVQC VVNGAYGAPF FVTRFREALF HYSAQFDMLD 1200 ATIPRDNDER LLIERDLLGR WALNVIACEG ADRVDRPETY KQWQVRNHRA GLTQLPLEPQ 1260 VVELVRHKVK SLYHKDFVID VDHNWLLQGW KGRILYAMSA WDALFDDDMV LPYISRLLME 1320 DDVDDHFFYQ YPDHPALLHA QQPFAQILDD EAATAAFPTA AVHFDAAGDK QGSLDMVNMA 1380 FLKGMEEANK FLPTNTSSLI LLSSSTLQLQ GEVVVDGAIN SKKVNCRDDD LEVTRATKLM 1440 APEPELEEEG AREMFDEMML QEHEICMKGV KQLSLSVGTA SENKSKSSSK KPRGRRTVIH 1500 TEPVDLHNLL LHCAQAVATD DRRSAHELLR QIKQHSSPWG DAGQRLAHCF AQGLEARLAG 1560 TGSQVYRSLM SQRTSVVDFL KAYRLYMEAC CCKKVAFVFS NKTIYDAVAG RSRLHIVDYG 1620 LSYGFQWPGL LRELAARRGG PPEVRITGID LPQPGFRPDQ HIEETGRRLS KYADELGVPF 1680 KFQGIAATRK ESVRLEELEG EADEVVVVIS LCHFRSVMDE SLLDRRSPRD EVLSNIRRMR 1740 PDVFIHGIMN AAYGATYFLT RFREALYYYA AQFDLLDATV ARDSHERMLV ERDIFGRAAL 1800 NVIACEGAER VERPEMYKQW QARNQRAGLR QLPLNPQVVR LVLDKVRDKY HKDFVVDEDQ 1860 RWLLHRWKGR VLYALSTWVA QHS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 8e-43 | 309 | 1834 | 24 | 377 | Protein SCARECROW |
5b3h_D | 8e-43 | 309 | 1834 | 24 | 377 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137064 | 0.0 | AC137064.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015617900.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | A0A0E0MIE4 | 0.0 | A0A0E0MIE4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC11G20010.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-142 | GRAS family protein |