 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OPUNC11G11990.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
SBP |
| Protein Properties |
Length: 215aa MW: 23249.8 Da PI: 8.1349 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC11G11990.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 44.7 | 3.5e-14 | 2 | 32 | 48 | 78 |
SEEETTT--SS--S-STTTT-------S--- CS
SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78
+fh+l efD++k+sCr+rL++hn+rrrk+q+
OPUNC11G11990.1 2 KFHNLAEFDDGKKSCRKRLDGHNRRRRKPQH 32
8***************************987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 215 aa
Download sequence Send
to blast |
MKFHNLAEFD DGKKSCRKRL DGHNRRRRKP QHDALNPRSF LPYQQANQFS VYPQTFPIAD 60
QNTDALMHPL DRHPPFSISF SGTFRAPKQF PFLQDGSSGL STSRHDLLRP FSSPEDGANI 120
TTTRSACNGV PHGLDPECAL SLLSSSLHPS PAAGISSATA PAQFAPSSFS RIAASSQAVT 180
TAFASDGGSV AGDHVLVPAV TYEDPSQALP FSWQV
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 12 | 29 | KKSCRKRLDGHNRRRRKP |
| Functional Description ? help
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| Source |
Description |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC133608 | 0.0 | AC133608.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0085G12, complete sequence. |
| GenBank | AC135569 | 0.0 | AC135569.6 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0018F17, complete sequence. |
| GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
