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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OPUNC11G07890.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
FAR1 |
| Protein Properties |
Length: 164aa MW: 18206.7 Da PI: 10.2312 |
| Description |
FAR1 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC11G07890.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | FAR1 | 73.7 | 3.9e-23 | 39 | 128 | 2 | 88 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkle.leHnHe 88
fY++YA ++GF+vr sks s+ ++ i++r+fvC+++g ++++++ ++k+rr+ra+ r C a+l+v+++ +++w v+++ ++H He
OPUNC11G07890.1 39 FYCAYAARAGFRVRSSKSFASRIDDAIIMRRFVCTRQGLPSRKDTLldASKKRRNRASARAACPAMLQVNRRPSSRWLVSRCTyNDHVHE 128
9**************************************999988787999******************************986778776 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 164 aa
Download sequence Send
to blast |
MPLSAGDEDA AVPGPSSVGE PREPEAGMEF ASPEEARAFY CAYAARAGFR VRSSKSFASR 60
IDDAIIMRRF VCTRQGLPSR KDTLLDASKK RRNRASARAA CPAMLQVNRR PSSRWLVSRC 120
TYNDHVHEHA AVTIQLSTNL FNLLQEPHFL HQLPPPSTKK TALN
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC135459 | 1e-145 | AC135459.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0004P24, complete sequence. |
| GenBank | AC138000 | 1e-145 | AC138000.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0024M06, complete sequence. |
| GenBank | AP014967 | 1e-145 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
