 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OPUNC11G05640.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
C2H2 |
| Protein Properties |
Length: 153aa MW: 16326.3 Da PI: 8.9932 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC11G05640.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 15 | 6.9e-05 | 41 | 63 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C+ C++ F++ L H+++H
OPUNC11G05640.1 41 YPCGFCKREFRSAQALGGHMNVH 63
99*******************99 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 153 aa
Download sequence Send
to blast |
MSSSGSSSGC RREEAWRQQQ LIHYSGGGGG GLLVQAKARS YPCGFCKREF RSAQALGGHM 60
NVHRRERAKL RLTQTHQQQA QAALASPSTT TKSPLPPLLP NLNYPPPPHD HQLPAAGGGS 120
SSSPPALHLE LARPPAAEDD DGGLDLELRL AFC
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP005873 | 1e-46 | AP005873.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1370C05. |
| GenBank | AP014958 | 1e-46 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012610 | 1e-46 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
