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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OPUNC11G04480.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
TCP |
| Protein Properties |
Length: 451aa MW: 45660.4 Da PI: 7.8903 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC11G04480.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 145.7 | 3.2e-45 | 148 | 302 | 2 | 137 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksa 94
g+k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ a+s +s+as+sss++ a+++
OPUNC11G04480.1 148 SGAKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSsLAVSLRSAASHSSSPRTAPFH 241
578******************************************************************99999**********9999999999 PP
TCP 95 akskksqksaasalnlakesr...................akarararertrekmriknkln 137
+ +++q++ a++l +++++ a + +r+r+r++++ +++++++
OPUNC11G04480.1 242 -HLQQQQHDVAAMLGFHHHQLlpppphqqhqhpeapqdpgAGEFMRKRYREADDLFKDTSRQ 302
.566677777779****988899999999999999999999999999999999999998876 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
| GO:0005634 | Cellular Component | nucleus |
| GO:0001047 | Molecular Function | core promoter binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 451 aa
Download sequence Send
to blast |
MCVVANCVLI LVVLAVGGGG GGGGLRAATA AAAEAEGGME QQAAPSSSTS TSTNSSRSTS 60
DHHHAHAAAA AAAAAQVVHQ HQHHPFYYAA AHGGAGAAGN TMPAPASFMG SLAIVPAAAA 120
ATAAAAPGGQ VQGAAPVASS EKKAVVSSGA KRPTKDRHTK VEGRGRRIRM PALCAARVFQ 180
LTRELGHKTD GETIEWLLQQ AEPAIVAATG TGTIPANFSS LAVSLRSAAS HSSSPRTAPF 240
HHLQQQQHDV AAMLGFHHHQ LLPPPPHQQH QHPEAPQDPG AGEFMRKRYR EADDLFKDTS 300
RQDPDGNSPA AGEAEQKARA AAAAAPPPTA PSAMWAVGPN TTGATAAFWM QPAWAFPGAG 360
AGNTVQAPLQ FMSRSNFPTA MNVSMADNNS NNNLGMLAAL NSCGGAGGGR SGSGGDHQHQ 420
HEGQSSPAEM DHQRRANGGG GGEAGGAASS Q
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC120539 | 0.0 | AC120539.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence. |
| GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
