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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC11G03940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 316aa MW: 32578.1 Da PI: 5.6668 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66 | 7.5e-21 | 130 | 179 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae Aa+a+++a+++++g OPUNC11G03940.1 130 RYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFDTAEAAARAYDEAALRFRG 179 8********.**********64....55************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.52E-20 | 129 | 189 | No hit | No description |
PROSITE profile | PS51032 | 25.528 | 130 | 187 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-32 | 130 | 188 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-22 | 130 | 188 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.4E-36 | 130 | 193 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.1E-14 | 130 | 179 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-12 | 131 | 142 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-12 | 153 | 169 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MCCGKVASPP GPRLPRLAGA GGEDEEEEAA AAAGMLSRHG QAREMTVMVS ALARVVAGGG 60 GGGGVGAEEA WWPPAYGGAP LPPSPSPAAH EHTAAMAAGQ YAPATASPHE QASSPSSTDA 120 SAGGGTGRKR YRGVRQRPWG KWAAEIRDPV KAARVWLGTF DTAEAAARAY DEAALRFRGC 180 RAKLNFPEDA ALLPPPPPAP APAPTETTMP SQSQGMVDGQ EYSEYARFLQ GAGEPPHFLE 240 QIMDSPRPST AAGASSSGQS SFPLLYSFAG HELGNEPNLA RPPESGGAGD GRRGSPPPAT 300 WPDYGWGAPP PWDPSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-22 | 129 | 187 | 4 | 63 | ATERF1 |
3gcc_A | 1e-22 | 129 | 187 | 4 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 126 | 132 | GRKRYRG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012619 | 0.0 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015617618.1 | 1e-102 | ethylene-responsive transcription factor ERF110 | ||||
TrEMBL | A0A0E0MCV6 | 0.0 | A0A0E0MCV6_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC11G03940.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16999 | 12 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 2e-18 | ethylene response factor 110 |