PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G03940.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 316aa    MW: 32578.1 Da    PI: 5.6668
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G03940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.5e-21130179255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa+a+++a+++++g
  OPUNC11G03940.1 130 RYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFDTAEAAARAYDEAALRFRG 179
                      8********.**********64....55************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.52E-20129189No hitNo description
PROSITE profilePS5103225.528130187IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-32130188IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-22130188IPR016177DNA-binding domain
SMARTSM003804.4E-36130193IPR001471AP2/ERF domain
PfamPF008475.1E-14130179IPR001471AP2/ERF domain
PRINTSPR003677.1E-12131142IPR001471AP2/ERF domain
PRINTSPR003677.1E-12153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MCCGKVASPP GPRLPRLAGA GGEDEEEEAA AAAGMLSRHG QAREMTVMVS ALARVVAGGG  60
GGGGVGAEEA WWPPAYGGAP LPPSPSPAAH EHTAAMAAGQ YAPATASPHE QASSPSSTDA  120
SAGGGTGRKR YRGVRQRPWG KWAAEIRDPV KAARVWLGTF DTAEAAARAY DEAALRFRGC  180
RAKLNFPEDA ALLPPPPPAP APAPTETTMP SQSQGMVDGQ EYSEYARFLQ GAGEPPHFLE  240
QIMDSPRPST AAGASSSGQS SFPLLYSFAG HELGNEPNLA RPPESGGAGD GRRGSPPPAT  300
WPDYGWGAPP PWDPSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22129187463ATERF1
3gcc_A1e-22129187463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126132GRKRYRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617618.11e-102ethylene-responsive transcription factor ERF110
TrEMBLA0A0E0MCV60.0A0A0E0MCV6_ORYPU; Uncharacterized protein
STRINGOPUNC11G03940.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169991212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-18ethylene response factor 110