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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OPUNC11G03650.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
GRAS |
| Protein Properties |
Length: 398aa MW: 43741.6 Da PI: 4.2973 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC11G03650.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 184.7 | 6.6e-57 | 108 | 395 | 80 | 373 |
GRAS 80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetger.LakfAeel 172
+ ++ + +sP++kf+h+t+NqaIl+a+ g+ vH++D++i++G+QW +L+ La R + s+R+T++ + ++++++t+ r L +fAe+l
OPUNC11G03650.1 108 VNQIIQGLSPFVKFAHFTTNQAILDATVGDMDVHVVDLNIGEGIQWSSLMSDLARRGG--NSFRLTAITIYG-EYNDSTHATAVRlLPEFAESL 198
6678899************************************************954..59******9943.3667777776662679***** PP
GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.......adh.nsesFlerfl 258
++pf++n + +++ ++l +++ + + +++V++ ++ sl+ ++ +L +vk+l+Pk+vv+ve++ a++ +++sF+e f+
OPUNC11G03650.1 199 ELPFQYNSICVHNEDEL--HAFFEDCKGSVIVSCDTTSMYYK----SLNTLQSVLLVCVKKLQPKLVVIVEEDlvrigrgASTpSNASFVEFFF 286
********877765555..777777799******99887775....33333469*******************65555443444556******* PP
GRAS 259 ealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
eal++++++f+sl + ++ + + vE el+g++i++ v + g+ r+e + +e l GF + +ls + +qa++l+ ++ + +
OPUNC11G03650.1 287 EALHHFTTVFESLVSCFSGSNyeACLRLVEMELVGPRIQDFVGKYGSVRVEANA-----SEVL--EGFMACELSACNIAQARMLVGLFN-RVFG 372
*************777777775566789********************999888.....5555..5***********************.77** PP
GRAS 351 veeesgslvlgWkdrpLvsvSaW 373
v e+g l l+Wk+rpL+svS+W
OPUNC11G03650.1 373 VVYEKGRLALCWKSRPLISVSVW 395
*********************** PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 398 aa
Download sequence Send
to blast |
MALDSNELHQ HDAPDVDLSV NCDDRILGHE NCNLAAIQEE LLEEDSLSDL LLAGAEAVEA 60
GDSILASVAF SRLDDSLSGI LENGAASSFD RLAYHFDQEP LPSGTMLVNQ IIQGLSPFVK 120
FAHFTTNQAI LDATVGDMDV HVVDLNIGEG IQWSSLMSDL ARRGGNSFRL TAITIYGEYN 180
DSTHATAVRL LPEFAESLEL PFQYNSICVH NEDELHAFFE DCKGSVIVSC DTTSMYYKSL 240
NTLQSVLLVC VKKLQPKLVV IVEEDLVRIG RGASTPSNAS FVEFFFEALH HFTTVFESLV 300
SCFSGSNYEA CLRLVEMELV GPRIQDFVGK YGSVRVEANA SEVLEGFMAC ELSACNIAQA 360
RMLVGLFNRV FGVVYEKGRL ALCWKSRPLI SVSVWIPV
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC120534 | 0.0 | AC120534.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0084A20, complete sequence. |
| GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012619 | 0.0 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
