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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC11G02570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 137aa MW: 14720.8 Da PI: 10.9776 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.8 | 1.2e-05 | 56 | 95 | 5 | 48 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAv 48 h+++ r +riN++++eL +l+ +a ++ +s ae+Le A+ OPUNC11G02570.1 56 HSAAAREWWRRINNKMAELSRLILSA----ARMNSTAEMLEAAT 95 8888899999***************8....577********997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MGRWVKIEWE QGKGSFAFLE LKKGGAVFVR GAGATEVKKG ATVGGGDDVC HNQPVHSAAA 60 REWWRRINNK MAELSRLILS AARMNSTAEM LEAATATYGS TSSAPAAALS SISHRGPLLH 120 FSQQRRLPSP PSCARKT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC087852 | 4e-37 | AC087852.11 Oryza sativa chromosome 3 BAC OJ1124_H03 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 4e-37 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 4e-37 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0MCD9 | 6e-96 | A0A0E0MCD9_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC11G02570.1 | 1e-96 | (Oryza punctata) |