PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G02380.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 1111aa    MW: 122212 Da    PI: 8.3691
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G02380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS188.25.4e-585038822288
             GRAS  22 alLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHi 114
                      ++Lar   la+ +g  p +Rlaa ++  La+rl+r v+ + +al   +      +++ aa++ f+e+sP++k+++++ N+aI+eave+e+ vH+
  OPUNC11G02380.1  50 RCLARTTGLAAAAGdGPRKRLAAAMVDCLARRLLRPVPAITDALIDPSGY---LDRRSAARRGFFELSPFPKVAFVVGNRAIVEAVENESLVHV 140
                      57999999999999679***********************9998555444...8999999********************************** PP

             GRAS 115 iDfd..isqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rvkpgEa 201
                      + ++   +q  QW+ Ll++L  R+egp   +R+T+v++    + e l +++e  ++ Aeel ++f+f+v v+ +ledl++++L     +k+gEa
  OPUNC11G02380.1 141 VGMSgpFTQTCQWIQLLHELRRRAEGPSrAVRLTVVHD----DGEFLAKMAELVSDEAEELVMEFKFHV-VVGQLEDLNFSNLhgvlGIKSGEA 229
                      ***86679****************776659********....9*************************9.7999********966667899*** PP

             GRAS 202 laVnlvlqlhrll....................................................................desvsleserdev 227
                      laV++ lqlhrll                                                                    + ++    +  ++
  OPUNC11G02380.1 230 LAVSCTLQLHRLLaaaddayssrsahlnqmaiiaqlqhmaasscppsscgasvqckddddsyrspgtplafvsppastphfQTPA----PLASF 319
                      ***************************************************************************7744444444....5666* PP

             GRAS 228 LklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak....lpres....eerikvEre 288
                      L +v+ lsPk+vvv+eq+adhn+ sF +rf+eal++y+a+fdsl+a     l++ +    +er+ vEr+
  OPUNC11G02380.1 320 LFAVRALSPKIVVVAEQDADHNGVSFRKRFCEALHHYAAVFDSLDAAavtaLAASHlwppDERAQVERV 388
                      ********************************************7663333222225566666666666 PP

2GRAS234.83.8e-7245580276374
             GRAS  76 eelaalklfsevsPilkfshltaNqaIleavege....ervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetge 163
                      +  aa++ f+++ P+l  +++t N+aI+ea+e e    + vHi+D++ s  ++ QW+ Ll+ +   p+g+p+l +T++++    ++e l  +++
  OPUNC11G02380.1 455 TLRAARCNFFKLNPYLSTGFVTINRAIMEAMEDEkvelQVVHIVDLSCSaaHPWQWLKLLDDFHGWPGGAPELYLTVLHD----DNEFLADMQS 544
                      34456666**************************9998999*****8653389***************************....9********* PP

             GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkp....gEalaVnlvlqlhrll....................................... 214
                       L+k Ae+l+v+f+f   v  rl++l++++Lr       g a+a++++lq+h ll                                       
  OPUNC11G02380.1 545 LLSKKAESLQVSFHFIS-VIGRLDTLDFSNLRSTFqikfGVAVAISCALQMHCLLlvddnlsstsiaqlqkmanftqpkqmassvcspastlny 637
                      *****************.799**********54444555******************************************************* PP

             GRAS 215 ..desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak...lpreseerikvErellgreivnvvacega 303
                          s  +++   ++L++++ l+P+++v++eq+adhn+  F +rf e l+yy+alfd+++a     pr ++er  vEr++l++ei+n++ ceg 
  OPUNC11G02380.1 638 lqTPSPRTPKLLARLLSAIQALKPNIMVIMEQDADHNTLLFCDRFNEVLNYYAALFDCFHAVaaaNPRRTDERLRVERMILREEIKNILVCEGV 731
                      98666777778899********************************************965512146667************************ PP

             GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +r erhe+l +W + +ee+GF++v+ls +a  + k  l  ++ +  + +e++g+l+l W + +L+s+SaWr
  OPUNC11G02380.1 732 HRHERHEKLDQWAMYMEESGFHNVQLSFSAIREGKENLLSFGLKNCQNKEDRGCLLLSWGSTNLYSISAWR 802
                      ******************************************888*************************8 PP

3GRAS766.9e-24909101937146
             GRAS   37 pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfd..isqGlQWp 126 
                       +++Rlaa+f+ ALa++l++  ++l++al +s++s + +  +  a++  ++v P+lk+++lt+N+aIlea+ege+ vH++Df+  + +++QW+
  OPUNC11G02380.1  909 ALKRLAAVFADALARKLLNLIPGLSRALLSSASSADAHL-VPVARRHMFDVLPFLKLAYLTTNHAILEAMEGERFVHVVDFSgpAANPVQWI 999 
                       789*************************99999855544.446778899********************************966899***** PP

             GRAS  127 aLlqaLasRpegppslRiTg 146 
                       aL++a+  R++   + R  +
  OPUNC11G02380.1 1000 ALFHAFRGRRGARRQRRASA 1019
                       *******9998877666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.0494363IPR005202Transcription factor GRAS
PfamPF035141.9E-5550388IPR005202Transcription factor GRAS
PROSITE profilePS5098530.978359782IPR005202Transcription factor GRAS
PfamPF035141.3E-69455802IPR005202Transcription factor GRAS
PROSITE profilePS5098512.9058431111IPR005202Transcription factor GRAS
PfamPF035142.4E-219091019IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 1111 aa     Download sequence    Send to blast
MFYGTDAASP ELSLCSPYGP WTQGHGPTKQ LGLALLECAA HRLGPWRRPR CLARTTGLAA  60
AAGDGPRKRL AAAMVDCLAR RLLRPVPAIT DALIDPSGYL DRRSAARRGF FELSPFPKVA  120
FVVGNRAIVE AVENESLVHV VGMSGPFTQT CQWIQLLHEL RRRAEGPSRA VRLTVVHDDG  180
EFLAKMAELV SDEAEELVME FKFHVVVGQL EDLNFSNLHG VLGIKSGEAL AVSCTLQLHR  240
LLAAADDAYS SRSAHLNQMA IIAQLQHMAA SSCPPSSCGA SVQCKDDDDS YRSPGTPLAF  300
VSPPASTPHF QTPAPLASFL FAVRALSPKI VVVAEQDADH NGVSFRKRFC EALHHYAAVF  360
DSLDAAAVTA LAASHLWPPD ERAQVERVVT KATGCGVLGG FAPGPRLSCR GYHPSRSSTQ  420
GAGTFPLPES GSGFRDVLGL PGALIDPSDY FEQSTLRAAR CNFFKLNPYL STGFVTINRA  480
IMEAMEDEKV ELQVVHIVDL SCSAAHPWQW LKLLDDFHGW PGGAPELYLT VLHDDNEFLA  540
DMQSLLSKKA ESLQVSFHFI SVIGRLDTLD FSNLRSTFQI KFGVAVAISC ALQMHCLLLV  600
DDNLSSTSIA QLQKMANFTQ PKQMASSVCS PASTLNYLQT PSPRTPKLLA RLLSAIQALK  660
PNIMVIMEQD ADHNTLLFCD RFNEVLNYYA ALFDCFHAVA AANPRRTDER LRVERMILRE  720
EIKNILVCEG VHRHERHEKL DQWAMYMEES GFHNVQLSFS AIREGKENLL SFGLKNCQNK  780
EDRGCLLLSW GSTNLYSISA WRQNRGSSSG SREHIVISYP KFMRLIKRLR NSYGYQLRLC  840
CTNRGMFQDD MLSSAMSSPA SSVYSPSPSP SNGSWVQELS HDQQSVRLIG LLYQCAAEVA  900
TGAFDPPHAL KRLAAVFADA LARKLLNLIP GLSRALLSSA SSADAHLVPV ARRHMFDVLP  960
FLKLAYLTTN HAILEAMEGE RFVHVVDFSG PAANPVQWIA LFHAFRGRRG ARRQRRASAS  1020
LPPRRRRREE ARRRRLPHPG LDHRALQPEK LRRAARAGAE HAAAAEPRRV RGAVAVTPLT  1080
SSSNGGAPDV DAEAGELPVG GEVAIYPRRS W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-1643880176378Protein SCARECROW
5b3h_A4e-1643880175377Protein SCARECROW
5b3h_D4e-1643880175377Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
110231035RRRRREEARRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3779470.0FQ377947.1 Oryza glaberrima chromosome 12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616660.10.0scarecrow-like protein 3 isoform X1
TrEMBLA0A0E0MCB20.0A0A0E0MCB2_ORYPU; Uncharacterized protein
STRINGOPUNC11G02380.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-64scarecrow-like 3