PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC11G02380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 1111aa MW: 122212 Da PI: 8.3691 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 188.2 | 5.4e-58 | 50 | 388 | 22 | 288 |
GRAS 22 alLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHi 114 ++Lar la+ +g p +Rlaa ++ La+rl+r v+ + +al + +++ aa++ f+e+sP++k+++++ N+aI+eave+e+ vH+ OPUNC11G02380.1 50 RCLARTTGLAAAAGdGPRKRLAAAMVDCLARRLLRPVPAITDALIDPSGY---LDRRSAARRGFFELSPFPKVAFVVGNRAIVEAVENESLVHV 140 57999999999999679***********************9998555444...8999999********************************** PP GRAS 115 iDfd..isqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rvkpgEa 201 + ++ +q QW+ Ll++L R+egp +R+T+v++ + e l +++e ++ Aeel ++f+f+v v+ +ledl++++L +k+gEa OPUNC11G02380.1 141 VGMSgpFTQTCQWIQLLHELRRRAEGPSrAVRLTVVHD----DGEFLAKMAELVSDEAEELVMEFKFHV-VVGQLEDLNFSNLhgvlGIKSGEA 229 ***86679****************776659********....9*************************9.7999********966667899*** PP GRAS 202 laVnlvlqlhrll....................................................................desvsleserdev 227 laV++ lqlhrll + ++ + ++ OPUNC11G02380.1 230 LAVSCTLQLHRLLaaaddayssrsahlnqmaiiaqlqhmaasscppsscgasvqckddddsyrspgtplafvsppastphfQTPA----PLASF 319 ***************************************************************************7744444444....5666* PP GRAS 228 LklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak....lpres....eerikvEre 288 L +v+ lsPk+vvv+eq+adhn+ sF +rf+eal++y+a+fdsl+a l++ + +er+ vEr+ OPUNC11G02380.1 320 LFAVRALSPKIVVVAEQDADHNGVSFRKRFCEALHHYAAVFDSLDAAavtaLAASHlwppDERAQVERV 388 ********************************************7663333222225566666666666 PP | |||||||
2 | GRAS | 234.8 | 3.8e-72 | 455 | 802 | 76 | 374 |
GRAS 76 eelaalklfsevsPilkfshltaNqaIleavege....ervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetge 163 + aa++ f+++ P+l +++t N+aI+ea+e e + vHi+D++ s ++ QW+ Ll+ + p+g+p+l +T++++ ++e l +++ OPUNC11G02380.1 455 TLRAARCNFFKLNPYLSTGFVTINRAIMEAMEDEkvelQVVHIVDLSCSaaHPWQWLKLLDDFHGWPGGAPELYLTVLHD----DNEFLADMQS 544 34456666**************************9998999*****8653389***************************....9********* PP GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkp....gEalaVnlvlqlhrll....................................... 214 L+k Ae+l+v+f+f v rl++l++++Lr g a+a++++lq+h ll OPUNC11G02380.1 545 LLSKKAESLQVSFHFIS-VIGRLDTLDFSNLRSTFqikfGVAVAISCALQMHCLLlvddnlsstsiaqlqkmanftqpkqmassvcspastlny 637 *****************.799**********54444555******************************************************* PP GRAS 215 ..desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak...lpreseerikvErellgreivnvvacega 303 s +++ ++L++++ l+P+++v++eq+adhn+ F +rf e l+yy+alfd+++a pr ++er vEr++l++ei+n++ ceg OPUNC11G02380.1 638 lqTPSPRTPKLLARLLSAIQALKPNIMVIMEQDADHNTLLFCDRFNEVLNYYAALFDCFHAVaaaNPRRTDERLRVERMILREEIKNILVCEGV 731 98666777778899********************************************965512146667************************ PP GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +r erhe+l +W + +ee+GF++v+ls +a + k l ++ + + +e++g+l+l W + +L+s+SaWr OPUNC11G02380.1 732 HRHERHEKLDQWAMYMEESGFHNVQLSFSAIREGKENLLSFGLKNCQNKEDRGCLLLSWGSTNLYSISAWR 802 ******************************************888*************************8 PP | |||||||
3 | GRAS | 76 | 6.9e-24 | 909 | 1019 | 37 | 146 |
GRAS 37 pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfd..isqGlQWp 126 +++Rlaa+f+ ALa++l++ ++l++al +s++s + + + a++ ++v P+lk+++lt+N+aIlea+ege+ vH++Df+ + +++QW+ OPUNC11G02380.1 909 ALKRLAAVFADALARKLLNLIPGLSRALLSSASSADAHL-VPVARRHMFDVLPFLKLAYLTTNHAILEAMEGERFVHVVDFSgpAANPVQWI 999 789*************************99999855544.446778899********************************966899***** PP GRAS 127 aLlqaLasRpegppslRiTg 146 aL++a+ R++ + R + OPUNC11G02380.1 1000 ALFHAFRGRRGARRQRRASA 1019 *******9998877666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 24.049 | 4 | 363 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.9E-55 | 50 | 388 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 30.978 | 359 | 782 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-69 | 455 | 802 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 12.905 | 843 | 1111 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.4E-21 | 909 | 1019 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 1111 aa Download sequence Send to blast |
MFYGTDAASP ELSLCSPYGP WTQGHGPTKQ LGLALLECAA HRLGPWRRPR CLARTTGLAA 60 AAGDGPRKRL AAAMVDCLAR RLLRPVPAIT DALIDPSGYL DRRSAARRGF FELSPFPKVA 120 FVVGNRAIVE AVENESLVHV VGMSGPFTQT CQWIQLLHEL RRRAEGPSRA VRLTVVHDDG 180 EFLAKMAELV SDEAEELVME FKFHVVVGQL EDLNFSNLHG VLGIKSGEAL AVSCTLQLHR 240 LLAAADDAYS SRSAHLNQMA IIAQLQHMAA SSCPPSSCGA SVQCKDDDDS YRSPGTPLAF 300 VSPPASTPHF QTPAPLASFL FAVRALSPKI VVVAEQDADH NGVSFRKRFC EALHHYAAVF 360 DSLDAAAVTA LAASHLWPPD ERAQVERVVT KATGCGVLGG FAPGPRLSCR GYHPSRSSTQ 420 GAGTFPLPES GSGFRDVLGL PGALIDPSDY FEQSTLRAAR CNFFKLNPYL STGFVTINRA 480 IMEAMEDEKV ELQVVHIVDL SCSAAHPWQW LKLLDDFHGW PGGAPELYLT VLHDDNEFLA 540 DMQSLLSKKA ESLQVSFHFI SVIGRLDTLD FSNLRSTFQI KFGVAVAISC ALQMHCLLLV 600 DDNLSSTSIA QLQKMANFTQ PKQMASSVCS PASTLNYLQT PSPRTPKLLA RLLSAIQALK 660 PNIMVIMEQD ADHNTLLFCD RFNEVLNYYA ALFDCFHAVA AANPRRTDER LRVERMILRE 720 EIKNILVCEG VHRHERHEKL DQWAMYMEES GFHNVQLSFS AIREGKENLL SFGLKNCQNK 780 EDRGCLLLSW GSTNLYSISA WRQNRGSSSG SREHIVISYP KFMRLIKRLR NSYGYQLRLC 840 CTNRGMFQDD MLSSAMSSPA SSVYSPSPSP SNGSWVQELS HDQQSVRLIG LLYQCAAEVA 900 TGAFDPPHAL KRLAAVFADA LARKLLNLIP GLSRALLSSA SSADAHLVPV ARRHMFDVLP 960 FLKLAYLTTN HAILEAMEGE RFVHVVDFSG PAANPVQWIA LFHAFRGRRG ARRQRRASAS 1020 LPPRRRRREE ARRRRLPHPG LDHRALQPEK LRRAARAGAE HAAAAEPRRV RGAVAVTPLT 1080 SSSNGGAPDV DAEAGELPVG GEVAIYPRRS W |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-16 | 438 | 801 | 76 | 378 | Protein SCARECROW |
5b3h_A | 4e-16 | 438 | 801 | 75 | 377 | Protein SCARECROW |
5b3h_D | 4e-16 | 438 | 801 | 75 | 377 | Protein SCARECROW |
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Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1023 | 1035 | RRRRREEARRRRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ377947 | 0.0 | FQ377947.1 Oryza glaberrima chromosome 12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616660.1 | 0.0 | scarecrow-like protein 3 isoform X1 | ||||
TrEMBL | A0A0E0MCB2 | 0.0 | A0A0E0MCB2_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC11G02380.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 1e-64 | scarecrow-like 3 |