PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC11G00360.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 314aa MW: 34349 Da PI: 8.0915 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.9 | 7e-31 | 55 | 108 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+av++LGG+++AtPk +l+lm+v gL++ hvkSHLQ+YR+ OPUNC11G00360.2 55 PRLRWTPELHLSFVRAVDRLGGQDRATPKLVLQLMNVRGLSIGHVKSHLQMYRS 108 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.92 | 51 | 111 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-29 | 51 | 109 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.23E-15 | 52 | 109 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-22 | 54 | 110 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-8 | 56 | 107 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MGSAGKEEED GGGGAPAAAN NDGSSTSSTT VEEEDSGQRT SSSSSVRPYV RSKNPRLRWT 60 PELHLSFVRA VDRLGGQDRA TPKLVLQLMN VRGLSIGHVK SHLQMYRSKK IDESGQVIGG 120 ESWRSDDHLQ MRGGGHGGQA YNLGHLSLPA LHHRSITAGS GTIFQSRFGN SWSPWRCHGS 180 YWLRAGHHLL VGSKPYYDPP PAAEAEAPFH RSSARYVARA NTSHLPDFVQ GSSSSPDDHI 240 MNHQRPVLKE MICSEGSNHQ EGPLNLDLSL DICPRGEKRK REFSWRKQEE AHDHAIGGDQ 300 EAKSCATGLS LSLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-17 | 56 | 110 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-17 | 56 | 110 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-17 | 56 | 110 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-17 | 56 | 110 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241171 | 0.0 | AK241171.1 Oryza sativa Japonica Group cDNA, clone: J065117O05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015617115.1 | 1e-176 | probable transcription factor RL9 isoform X1 | ||||
TrEMBL | A0A0E0MBI3 | 0.0 | A0A0E0MBI3_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC11G00360.2 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4408 | 36 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 6e-38 | G2-like family protein |