PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC10G17380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | STAT | ||||||||
Protein Properties | Length: 687aa MW: 75919.5 Da PI: 5.1842 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 187.2 | 1.9e-58 | 234 | 354 | 1 | 121 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklk 93 l+v+l++a+g+++ kd e+vasL+yad+g++veks dd+e+pLLis+dG+e+++++rpl+++rGra+fklkisqLsskcdn+Lfri f+++ +k OPUNC10G17380.1 234 LEVLLVDAFGEAA-KDREIVASLVYADNGALVEKSrDDSEPPLLISCDGIEYPAVSRPLPIIRGRALFKLKISQLSSKCDNKLFRIFFSTLGMK 326 79**********7.*********************9********************************************************** PP STAT 94 kypfleavskpirCisrsrntrsssltk 121 +ypflea+skpirCisr+r++r+++++k OPUNC10G17380.1 327 RYPFLEAYSKPIRCISRNRTSRPLGSAK 354 **********************988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF49899 | 1.07E-6 | 40 | 173 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
SuperFamily | SSF55550 | 3.55E-5 | 604 | 673 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 9.277 | 611 | 687 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 687 aa Download sequence Send to blast |
MAAAPGCGGG DGYCDLRDVR IECDLGKVRG GGEGGEGGGG GGFTVCFWLY LSSSARPSSV 60 ILHQVAEGGG DKVPFLALGE GNKLLLFPLL GFHREAPTPD SSYPWTDITN LTEVNECPLD 120 NWFHVGCEVT ENIMCLHIDG DLVAETHLHS LYNEPDYQDD ANQINLLGSM DNLEGYVYNM 180 ELSCMLGTIQ QQFAKNPPFK LSIDYSCSDG IEEGDDGIWN IVGGKASCRR NFILEVLLVD 240 AFGEAAKDRE IVASLVYADN GALVEKSRDD SEPPLLISCD GIEYPAVSRP LPIIRGRALF 300 KLKISQLSSK CDNKLFRIFF STLGMKRYPF LEAYSKPIRC ISRNRTSRPL GSAKRIGSAS 360 MDEIQSINNC EGFGHNGKAN GRLQTHDPSS VVCFHPSKFS KIEDDVQKTA SQNKHAKKMV 420 LDKGAQDVMG SDSTASDYDS MDAGSSWSLS DGDEVESFSD AEIFRYCLDG THERSKFLRA 480 AAPSVNEDDL VKLANQVSLY SGCTHHRNQI LMSKQLLQEG ADIWSIISKN NERALWSSAV 540 PEIKAKFLEI VHPSNRGLSE QDFEVLRGIA CCGDDIGRDE FDKLWSWLYP VAVALSKDKI 600 NRLWDFTAHR WIEGLITLQE TENALRSSRE RLKKPGTFVL RFPTTRSWPH PDAGSLVVTY 660 VGSDNSIHHR LLSLDVRVDR LPSSMQS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070829 | 0.0 | AK070829.1 Oryza sativa Japonica Group cDNA clone:J023065P16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614084.1 | 0.0 | SH2 domain-containing protein A isoform X1 | ||||
TrEMBL | A0A0E0MAX4 | 0.0 | A0A0E0MAX4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC10G17380.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7547 | 31 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78540.1 | 1e-143 | SH2 domain protein B |