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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OPUNC10G17200.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
Trihelix |
Protein Properties |
Length: 340aa MW: 36003.5 Da PI: 8.8435 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC10G17200.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 72.1 | 9.7e-23 | 56 | 145 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+Wt++e+laLiea+r+++e lr+g+l++ +W++v+ ++ + ++s +qC++k+e+l+kry+++++++ +r+++ ++p+f l+
OPUNC10G17200.1 56 CWTHEETLALIEAYRDRWEGLRKGNLRASDWDDVAGAVtarcgrFPTATHKSGVQCRHKIEKLRKRYRAERARAAGRSKG--PKWPFFPLLH 145
8*************************************99998888899**************************98443..47****9886 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 340 aa
Download sequence Send
to blast |
MSSSSSPPPN PDALSSPDLP PLAAPVAAAA AAAAAAASSG GGGGAGGSGR RLPPPCWTHE 60 ETLALIEAYR DRWEGLRKGN LRASDWDDVA GAVTARCGRF PTATHKSGVQ CRHKIEKLRK 120 RYRAERARAA GRSKGPKWPF FPLLHDLAGG GAPDPSPNPI IKIKSKGPAA AAASPSPASP 180 SPVSSPSSEE EEDEEEAAAA DAGRSRSLHG LISNGGSGSG LRFTIPKASR SKPVAQREQP 240 TAIKVEKSEE DAEVEAIAEV ASALRAVGDK FLRMEERRLE ISLQIEKERM ELEMKRTQTL 300 LDAQQLFVEA FLGKQQQHLH HHKKAKMISS SAAASAMEED
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC084763 | 0.0 | AC084763.4 Oryza sativa chromosome 10 BAC OSJNBa0027P10 genomic sequence, complete sequence. |
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |