PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC10G15300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 314aa MW: 35042.1 Da PI: 10.4325 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.9 | 3e-29 | 90 | 140 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+E+SvLCdaeva+i+fs++g+lye++s OPUNC10G15300.1 90 KRIENPTSRQVTFSKRRNGLLKKAFEISVLCDAEVALIVFSPRGRLYEFAS 140 79***********************************************86 PP | |||||||
2 | K-box | 61.4 | 3.5e-21 | 160 | 252 | 6 | 98 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++ +++ ++ + + L k++e L + R++lGe+Le +s++eL+ Le +Leksl +iR kK+ell +qi +l++ke+ l ++n++Lr k OPUNC10G15300.1 160 NNKAIQQDIQQVKDDTLGLAKKLEALDDSRRKILGENLEGCSIEELRGLEIKLEKSLHNIRLKKTELLEQQIAKLKEKERTLLKDNENLRGKH 252 445678889999*****************************************************************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.034 | 82 | 142 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-38 | 82 | 141 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.11E-30 | 84 | 166 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.22E-40 | 84 | 160 | No hit | No description |
PRINTS | PR00404 | 4.5E-30 | 84 | 104 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 84 | 138 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.3E-26 | 91 | 138 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-30 | 104 | 119 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-30 | 119 | 140 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.1E-21 | 165 | 251 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.35 | 168 | 258 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MAIAGLGRSH SRGSWVVGFP GREVARAVAF FIWASSPRPR LVSSPLLASP PIRYYYTPIS 60 RVLAAGGGGG GRRRSTAREI GMVRGRTELK RIENPTSRQV TFSKRRNGLL KKAFEISVLC 120 DAEVALIVFS PRGRLYEFAS APSLQKTIDR YKAYTKDHVN NKAIQQDIQQ VKDDTLGLAK 180 KLEALDDSRR KILGENLEGC SIEELRGLEI KLEKSLHNIR LKKTELLEQQ IAKLKEKERT 240 LLKDNENLRG KHRNLEAAAV VANHMTTRTM PAWPRDEPMT SNSAGADADA MDVETELYIG 300 LPGTERSYNR SETG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 9e-17 | 82 | 158 | 1 | 76 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 9e-17 | 82 | 158 | 1 | 76 | Myocyte-specific enhancer factor 2B |
1tqe_R | 9e-17 | 82 | 158 | 1 | 76 | Myocyte-specific enhancer factor 2B |
1tqe_S | 9e-17 | 82 | 158 | 1 | 76 | Myocyte-specific enhancer factor 2B |
6c9l_A | 9e-17 | 82 | 158 | 1 | 76 | Myocyte-specific enhancer factor 2B |
6c9l_B | 9e-17 | 82 | 158 | 1 | 76 | Myocyte-specific enhancer factor 2B |
6c9l_C | 9e-17 | 82 | 158 | 1 | 76 | Myocyte-specific enhancer factor 2B |
6c9l_D | 9e-17 | 82 | 158 | 1 | 76 | Myocyte-specific enhancer factor 2B |
6c9l_E | 9e-17 | 82 | 158 | 1 | 76 | Myocyte-specific enhancer factor 2B |
6c9l_F | 9e-17 | 82 | 158 | 1 | 76 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF141965 | 0.0 | AF141965.1 Oryza sativa MADS-box protein FDRMADS8 mRNA, complete cds. | |||
GenBank | AK070135 | 0.0 | AK070135.1 Oryza sativa Japonica Group cDNA clone:J023043P08, full insert sequence. | |||
GenBank | AY551919 | 0.0 | AY551919.1 Oryza sativa (japonica cultivar-group) MADS-box protein RMADS214 mRNA, complete cds. | |||
GenBank | CT832559 | 0.0 | CT832559.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN008N04, full insert sequence. | |||
GenBank | EU519229 | 0.0 | EU519229.1 Oryza sativa Indica Group cultivar MR84 MADS-box protein UMS1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614799.1 | 1e-154 | MADS-box transcription factor 56 | ||||
Swissprot | A2Z9Q7 | 1e-157 | MAD56_ORYSI; MADS-box transcription factor 56 | ||||
TrEMBL | A0A0E0MA56 | 0.0 | A0A0E0MA56_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC10G15300.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1413 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22950.1 | 9e-68 | AGAMOUS-like 19 |